Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06- 26] 365 sequences; 25,429,610 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq59 183 4e-41 >seq59 Length=151500 Score = 183 bits (202), Expect = 4e-41 Identities = 634/982 (65%), Gaps = 24/982 (2%) Strand=Plus/Plus Query 53705 GCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTC 53763 |||| ||| ||||| || || ||||| ||||||| | | | ||| || | || ||||| Sbjct 86847 GCAAGAGAAGCCAGGTTGCACACGGCAACCTCATCGGGAGC-GCAGTACTCGATGATCTC 86905 Query 53764 AGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 53823 ||||||||| || || || ||||| | || | || |||||||| ||| || Sbjct 86906 AGTGCAAAGGTTGGAACTGCGAATAGTTCCCAGGTTCTTCTGGTTACTCTTGCGGTTGCA 86965 Query 53824 CGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTT 53883 |||||| || || ||||| || ||||||| ||| |||| | || | || || | Sbjct 86966 GTGATCCTTGTACAGCATGAAAGGGTTACCAGTCTCAGTCTGAGCCTCCAAGATAGCATA 87025 Query 53884 CCAGACGACACGAGCCTTTATTAT-AGATTTGTATCTCTTTTCTCTTTCGTATAGTGTAT 53942 ||| | | ||||| || | ||| | || | || || |||| |||| Sbjct 87026 CCACAGCTTCTGGGCCTTAATGGTCAGACGGCCACGTCCCTCCTGTT-CGTACTTGGTAT 87084 Query 53943 ACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACA 54002 | | ||||| || || || | | ||| ||||| || || | || |||| Sbjct 87085 AGAGAGCCTCAAATTCATCGCCATAGCAGTCAGCCAGGCCAGGGCACTCGTTGGGGCACA 87144 Query 54003 TCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 54062 | | | ||| | |||| | || || || ||||| || | |||||||||||| | | Sbjct 87145 TGAGAGTCCAGTTGCCGTTCTTCTCAACACGCTTCATGAACAAATCAGGAATCCACAAGG 87204 Query 54063 CTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 54122 | | || | ||| | | | | ||||| || || ||||| ||||| |||| Sbjct 87205 CAAGGAACAAATCGCGAGCACGAATCTCCTCCTTACCGTGGTTCTTCCGGAGATCAAGGA 87264 Query 54123 ACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGT 54182 || | | | ||||| |||||||| |||| ||| |||| | | | || || || |||| Sbjct 87265 ACTCGAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACCGGGACGCTTGT 87324 Query 54183 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 54242 | || |||||||| | ||| | ||| || || || | || | |||||| |||| ||||| Sbjct 87325 TACCACCCTGATCGACGTAACGAGCAGTATTGTTGAAGACACGCAACATGGGAACAATAC 87384 Query 54243 CATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA----TTACTA 54298 | || || | ||| ||||| || | || || ||| | ||||| ||| ||| Sbjct 87385 CGTTCGAGGTACCGTTGGTGCCAGCAATGTAAGAACCAGTAGCACGGATACGGTGTAC-- 87442 Query 54299 ATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 54358 ||| ||||| || || || ||||| || ||||| | ||||| || | || ||| Sbjct 87443 GTTG--AGACCAATGCCACCCGCCATCTTGGAGATCATAGCGCAAGTCTTGAGGGTGTCA 87500 Query 54359 TAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 54418 ||||| || || ||||| || ||| |||||| | | || || ||| | ||| | Sbjct 87501 TAGATACCTTCGATACTGTCCTCCTTCATGTCTACCAAGAAGCAAGAAGAAAGCTGGGGC 87560 Query 54419 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGT 54478 | ||| || || || || | ||||||||| || || || || | || || | Sbjct 87561 TGGGGAGTACCAGCGTTGAAGAGGGTAGGAGATGCATGAGTGAAGAACTTGCTCGACATG 87620 Query 54479 AGATTGTACGTCTCGATAGCTGAGTCTATAT------CCCATTGATGAATTCCTACTGCG 54532 || ||||| || || | | | || | || |||| || || || || Sbjct 87621 AGGTTGTAAGTTTCCAGAACACGCTCAACATTGTCACCCCA------GATACCGACAGCT 87674 Query 54533 ACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAG 54592 |||||||| | |||||||||||| | ||||| |||||| || | || || | ||| Sbjct 87675 ACACGCATAATCATGTGCTGAGGACGCTCAACAATCTTGCCGTCAAGCTTGAGAAGATAG 87734 Query 54593 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATA 54652 ||| ||||||| || || |||||||| || | ||| ||||| || || || | ||| Sbjct 87735 GATCTTTCCAAGGTCTTGAAACCAAAGTACTGGTAGTTGAAGTCACGGTCATAGACAATG 87794 Query 54653 ACTGAGTTGAGTTTATCCTTAT 54674 | |||| || | ||||||| Sbjct 87795 GCCGAGTCCAGCTCTTCCTTAT 87816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593718891145200