Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06-
26] 365 sequences; 25,429,610 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq38 329 3e-85
seq24 129 6e-25
seq14 125 7e-24
seq96 122 9e-23
>seq38
Length=199572
Score = 329 bits (364), Expect = 3e-85
Identities = 594/863 (69%), Gaps = 13/863 (2%)
Strand=Plus/Plus
Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635
||||| || |||| ||||||||| ||| |||||| | |||||||| | |||| ||
Sbjct 76104 GAGCCCCTCCTGCAAGAGAACCCCAACCGCTTCGTGCTCTTCCCCATCAAGTACCATGAG 76163
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||||||||| || |||||||| | ||||||| | ||| ||
Sbjct 76164 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCCGAGGAGATTGACTTG 76223
Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752
|||||||| ||||||| | ||| ||| | | | || | ||||||
Sbjct 76224 TCCAAGGATCTTCACGACTGGAACAACCGCATGACCAAGGATGAACAGTTCTTCATCTCT 76283
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
||||| || ||||| ||||| ||| ||||| || ||||||||||| |||||||||||
Sbjct 76284 CACGTCCTTGCCTTCTTCGCTGCCTCTGACGGTATTGTCAACGAGAACTTGGTCGAGCGT 76343
Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872
||| || ||||||||| | ||||||| || ||||| ||||| || ||||| |||
Sbjct 76344 TTCTCTGCCGAGGTGCAGATTCCCGAGGCCCGCTGCTTTTACGGTTTCCAGATTATGATG 76403
Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTTC 116928
|||||| | |||||||| | ||| || ||| ||||| || ||| | | || || |
Sbjct 76404 GAGAACATTCACTCGGAGACGTACTCCCTCCTGATCGATACCTACATCAAGGAGC-CTGC 76462
Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988
|| | | || |||| |||||||| || || || || ||| || |||||
Sbjct 76463 TCAGCGCACGTACC---TGTTCAACGCCATTGATACCATTCCTTGCATCCGCCGCAAGGC 76519
Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGC 117048
||| ||||| ||| ||||| ||| || ||| | |||| | | |||| ||||| ||
Sbjct 76520 CGACTGGGCCCTGAAGTGGATTACCGACAAGGAGTCGACCTTTGCCCAGCGTCTGGTTGC 76579
Query 117049 CTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAA 117108
||| || ||||| ||||| ||||||| || || || ||| | || ||||||||
Sbjct 76580 CTTTGCTGCCGTTGAGGGTATCTTCTTCTCTGGTGCCTTTGCCTCTATCTTTTGGCTGCG 76639
Query 117109 GAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGG 117168
|| || || | |||||||| |||| ||| |||||||| |||||| | || |||||
Sbjct 76640 CAAGCGTGGTATGATGCCCGGTTTGACCTTCTCAAACGAGCTGATCTCCCGTGATGAGGG 76699
Query 117169 TCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGC 117228
||| || |||||||||||| | || ||| || ||| | || || ||| |
Sbjct 76700 TCTTCACACCGACTTTGCCTGCCTTCTTTTCTCTCACTTGAACAACCGCCCTAGCAAGCA 76759
Query 117229 GCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGC 117288
| || ||| || |||| || || || | |||||| || ||||| || || ||
Sbjct 76760 GTTGATCCAGGACATTATCACTGATGCCGTTGTTATCGAGAAGGAGTTCCTTACTGAGGC 76819
Query 117289 GCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCG 117347
|| || |||| ||| || || | || || ||| | |||||||||||||
Sbjct 76820 TCTTCC-CTGCGCTCTTCTTGGTATGAACGCTGACCTCATGAAGACTTACATCGAGTTCG 76878
Query 117348 TCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGC 117407
|||||||| | || ||| | | || | | || |||| ||||| | | |||||
Sbjct 76879 TCGCCGACCGTCTTCTGGTGGCTCTCGGCAACGACAAGGTGTACAAGGCTTCTAACCCCT 76938
Query 117408 TGGACTTTATGAACCTCATCTCC 117430
| ||||||||| | |||||||
Sbjct 76939 TCGACTTTATGGAAAACATCTCC 76961
>seq24
Length=264051
Score = 129 bits (142), Expect = 6e-25
Identities = 143/188 (76%), Gaps = 2/188 (1%)
Strand=Plus/Plus
Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770
|||| ||||| ||||||||| |||| ||||| || |||||| | | |||| |||||
Sbjct 249680 TCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCCGACACTATTGACAACG-TCAAG 249738
Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830
|| |||| ||||| ||||| || ||| |||||||||| || || || | ||| ||
Sbjct 249739 TCCAAGATTCAGGACAAGGAGGGTATTCCCCCGGACCAGCAGCGCCTTATTTTCGCTGGA 249798
Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890
|| ||||| || || | ||||||||| |||||||||||| ||||||||| |||| ||
Sbjct 249799 AAGCAGCTTGAGGATGGTCGCACCCTCTCCGACTACAACATTCAGAAGGAGTCCACCCTT 249858
Query 40891 CATCTAGT 40898
|| || ||
Sbjct 249859 CACCTTGT 249866
Score = 114 bits (126), Expect = 1e-20
Identities = 153/210 (73%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || || ||||| ||||||||| | || || || || |
Sbjct 249886 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGTCCTCT 249945
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| | ||| || || | ||||| ||||| || || |||||||
Sbjct 249946 GACACCATTGACAACG-TGAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCA 250004
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || || | ||| ||||| ||||| || || | ||||||||| |||||||||
Sbjct 250005 GCAGCGTCTGATTTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAA 250064
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||| ||||||||| | || || || || ||
Sbjct 250065 CATTCAGAAGGAGTCTACTCTCCACCTTGT 250094
Score = 114 bits (126), Expect = 1e-20
Identities = 153/210 (73%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| || || |||||||| | || ||||| | |
Sbjct 250342 ATGCAGATCTTCGTGAAGACTCTCACTGGAAAGACCATCACTCTTGAAGTCGAGTCTTCT 250401
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | | |||| | ||| || || | ||||| ||||| |||||| | |||||
Sbjct 250402 GATACCATTGACAACG-TGAAGAGCAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCA 250460
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || |||| || || || |||||||| |||| || ||||| ||||||||
Sbjct 250461 GCAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAGGACGGCCGTACCCTGTCTGACTACAA 250520
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||||||||||||| |||| || || || ||
Sbjct 250521 CATCCAGAAGGAGTCCACTCTCCACCTGGT 250550
Score = 105 bits (116), Expect = 7e-18
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || || ||||| ||||| ||| | || ||||| | |
Sbjct 250114 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATTACCCTTGAGGTCGAGTCGTCA 250173
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | ||||| || || | ||||| ||||| |||||| ||||||||
Sbjct 250174 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 250233
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || | || | ||| ||||| ||||| || || | || || ||| || ||||||
Sbjct 250234 CAGCGTTTGATTTTCGCCGGCAAGCAGCTTGAGGATGGCCGTACTCTCTCGGATTACAAC 250293
Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892
|||||||||||| |||| || ||
Sbjct 250294 ATCCAGAAGGAGTCCACTCTTCA 250316
>seq14
Length=289536
Score = 125 bits (138), Expect = 7e-24
Identities = 150/201 (75%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || || ||||| || ||||||||| | || ||||| || | |||| | |
Sbjct 256218 TTCGTCAAGACCCTGACGGGTAAGACCATCACCCTGGAGGTCGAGTCCTCGGACACCATC 256277
Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817
| |||| ||||| || || | ||||| ||||| || || |||||||||| || ||
Sbjct 256278 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAGCAGCGCCT 256336
Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877
|||| ||| ||||| ||||| || || | |||||||| |||||||||||||||||
Sbjct 256337 GATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCGGACTACAACATCCAGAA 256396
Query 40878 GGAGGCCACGCTGCATCTAGT 40898
|||| |||| || || || ||
Sbjct 256397 GGAGTCCACTCTCCACCTGGT 256417
>seq96
Length=85826
Score = 122 bits (134), Expect = 9e-23
Identities = 145/194 (75%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| ||||| || ||||| || || || ||||| || || |||||| | || ||||| |
Sbjct 59496 AAGATGCAGATTTTCGTTAAGACCCTTACGGGTAAGACGATCACCCTTGAGGTCGAGTCT 59437
Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805
| |||| | | |||| ||||| || || | ||||| |||||||| ||| ||||
Sbjct 59436 TCGGACACGATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 59378
Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865
|||||| || || |||| ||| ||||| |||||||| || | |||||||| |||||
Sbjct 59377 CCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCTGACTA 59318
Query 40866 CAACATCCAGAAGG 40879
||||||||||||||
Sbjct 59317 CAACATCCAGAAGG 59304
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515216849312400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |