Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06- 26] 365 sequences; 25,429,610 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq38 329 3e-85 seq24 129 6e-25 seq14 125 7e-24 seq96 122 9e-23 >seq38 Length=199572 Score = 329 bits (364), Expect = 3e-85 Identities = 594/863 (69%), Gaps = 13/863 (2%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| || |||| ||||||||| ||| |||||| | |||||||| | |||| || Sbjct 76104 GAGCCCCTCCTGCAAGAGAACCCCAACCGCTTCGTGCTCTTCCCCATCAAGTACCATGAG 76163 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||| | ||||||| | ||| || Sbjct 76164 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCCGAGGAGATTGACTTG 76223 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 |||||||| ||||||| | ||| ||| | | | || | |||||| Sbjct 76224 TCCAAGGATCTTCACGACTGGAACAACCGCATGACCAAGGATGAACAGTTCTTCATCTCT 76283 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| || ||||| ||||| ||| ||||| || ||||||||||| ||||||||||| Sbjct 76284 CACGTCCTTGCCTTCTTCGCTGCCTCTGACGGTATTGTCAACGAGAACTTGGTCGAGCGT 76343 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| || ||||||||| | ||||||| || ||||| ||||| || ||||| ||| Sbjct 76344 TTCTCTGCCGAGGTGCAGATTCCCGAGGCCCGCTGCTTTTACGGTTTCCAGATTATGATG 76403 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTTC 116928 |||||| | |||||||| | ||| || ||| ||||| || ||| | | || || | Sbjct 76404 GAGAACATTCACTCGGAGACGTACTCCCTCCTGATCGATACCTACATCAAGGAGC-CTGC 76462 Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988 || | | || |||| |||||||| || || || || ||| || ||||| Sbjct 76463 TCAGCGCACGTACC---TGTTCAACGCCATTGATACCATTCCTTGCATCCGCCGCAAGGC 76519 Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGC 117048 ||| ||||| ||| ||||| ||| || ||| | |||| | | |||| ||||| || Sbjct 76520 CGACTGGGCCCTGAAGTGGATTACCGACAAGGAGTCGACCTTTGCCCAGCGTCTGGTTGC 76579 Query 117049 CTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAA 117108 ||| || ||||| ||||| ||||||| || || || ||| | || |||||||| Sbjct 76580 CTTTGCTGCCGTTGAGGGTATCTTCTTCTCTGGTGCCTTTGCCTCTATCTTTTGGCTGCG 76639 Query 117109 GAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGG 117168 || || || | |||||||| |||| ||| |||||||| |||||| | || ||||| Sbjct 76640 CAAGCGTGGTATGATGCCCGGTTTGACCTTCTCAAACGAGCTGATCTCCCGTGATGAGGG 76699 Query 117169 TCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGC 117228 ||| || |||||||||||| | || ||| || ||| | || || ||| | Sbjct 76700 TCTTCACACCGACTTTGCCTGCCTTCTTTTCTCTCACTTGAACAACCGCCCTAGCAAGCA 76759 Query 117229 GCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGC 117288 | || ||| || |||| || || || | |||||| || ||||| || || || Sbjct 76760 GTTGATCCAGGACATTATCACTGATGCCGTTGTTATCGAGAAGGAGTTCCTTACTGAGGC 76819 Query 117289 GCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCG 117347 || || |||| ||| || || | || || ||| | ||||||||||||| Sbjct 76820 TCTTCC-CTGCGCTCTTCTTGGTATGAACGCTGACCTCATGAAGACTTACATCGAGTTCG 76878 Query 117348 TCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGC 117407 |||||||| | || ||| | | || | | || |||| ||||| | | ||||| Sbjct 76879 TCGCCGACCGTCTTCTGGTGGCTCTCGGCAACGACAAGGTGTACAAGGCTTCTAACCCCT 76938 Query 117408 TGGACTTTATGAACCTCATCTCC 117430 | ||||||||| | ||||||| Sbjct 76939 TCGACTTTATGGAAAACATCTCC 76961 >seq24 Length=264051 Score = 129 bits (142), Expect = 6e-25 Identities = 143/188 (76%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 |||| ||||| ||||||||| |||| ||||| || |||||| | | |||| ||||| Sbjct 249680 TCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCCGACACTATTGACAACG-TCAAG 249738 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || |||| ||||| ||||| || ||| |||||||||| || || || | ||| || Sbjct 249739 TCCAAGATTCAGGACAAGGAGGGTATTCCCCCGGACCAGCAGCGCCTTATTTTCGCTGGA 249798 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || ||||| || || | ||||||||| |||||||||||| ||||||||| |||| || Sbjct 249799 AAGCAGCTTGAGGATGGTCGCACCCTCTCCGACTACAACATTCAGAAGGAGTCCACCCTT 249858 Query 40891 CATCTAGT 40898 || || || Sbjct 249859 CACCTTGT 249866 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || || || || | Sbjct 249886 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGTCCTCT 249945 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | ||| || || | ||||| ||||| || || ||||||| Sbjct 249946 GACACCATTGACAACG-TGAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCA 250004 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | ||| ||||| ||||| || || | ||||||||| ||||||||| Sbjct 250005 GCAGCGTCTGATTTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAA 250064 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| ||||||||| | || || || || || Sbjct 250065 CATTCAGAAGGAGTCTACTCTCCACCTTGT 250094 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || || |||||||| | || ||||| | | Sbjct 250342 ATGCAGATCTTCGTGAAGACTCTCACTGGAAAGACCATCACTCTTGAAGTCGAGTCTTCT 250401 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | ||| || || | ||||| ||||| |||||| | ||||| Sbjct 250402 GATACCATTGACAACG-TGAAGAGCAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCA 250460 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || || || |||||||| |||| || ||||| |||||||| Sbjct 250461 GCAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAGGACGGCCGTACCCTGTCTGACTACAA 250520 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| |||| || || || || Sbjct 250521 CATCCAGAAGGAGTCCACTCTCCACCTGGT 250550 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||| ||| | || ||||| | | Sbjct 250114 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATTACCCTTGAGGTCGAGTCGTCA 250173 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | ||||| || || | ||||| ||||| |||||| |||||||| Sbjct 250174 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 250233 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | || | ||| ||||| ||||| || || | || || ||| || |||||| Sbjct 250234 CAGCGTTTGATTTTCGCCGGCAAGCAGCTTGAGGATGGCCGTACTCTCTCGGATTACAAC 250293 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| |||| || || Sbjct 250294 ATCCAGAAGGAGTCCACTCTTCA 250316 >seq14 Length=289536 Score = 125 bits (138), Expect = 7e-24 Identities = 150/201 (75%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || ||||| || ||||||||| | || ||||| || | |||| | | Sbjct 256218 TTCGTCAAGACCCTGACGGGTAAGACCATCACCCTGGAGGTCGAGTCCTCGGACACCATC 256277 Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | |||| ||||| || || | ||||| ||||| || || |||||||||| || || Sbjct 256278 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAGCAGCGCCT 256336 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 |||| ||| ||||| ||||| || || | |||||||| ||||||||||||||||| Sbjct 256337 GATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCGGACTACAACATCCAGAA 256396 Query 40878 GGAGGCCACGCTGCATCTAGT 40898 |||| |||| || || || || Sbjct 256397 GGAGTCCACTCTCCACCTGGT 256417 >seq96 Length=85826 Score = 122 bits (134), Expect = 9e-23 Identities = 145/194 (75%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || || ||||| || || |||||| | || ||||| | Sbjct 59496 AAGATGCAGATTTTCGTTAAGACCCTTACGGGTAAGACGATCACCCTTGAGGTCGAGTCT 59437 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | |||| ||||| || || | ||||| |||||||| ||| |||| Sbjct 59436 TCGGACACGATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 59378 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || || |||| ||| ||||| |||||||| || | |||||||| ||||| Sbjct 59377 CCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCTGACTA 59318 Query 40866 CAACATCCAGAAGG 40879 |||||||||||||| Sbjct 59317 CAACATCCAGAAGG 59304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515216849312400