Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06-
26] 365 sequences; 25,429,610 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq24 98.7 1e-15
seq96 96.9 4e-15
seq14 86.0 7e-12
>seq24
Length=264051
Score = 98.7 bits (108), Expect = 1e-15
Identities = 139/193 (72%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| ||||| ||||| || | || || || | || || |||||||| ||||||||
Sbjct 250077 CTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAA 250018
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| || ||||||||||| | || | | |||||||||| ||| || || | |||
Sbjct 250017 AATCAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTGGACTTCA-CGT 249959
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | ||||| || || || || | |||||||| ||||| || || ||||| |
Sbjct 249958 TGTCAATGGTGTCAGAGGACTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGA 249899
Query 43171 CAAAGATTTGCAT 43183
||||||| |||||
Sbjct 249898 CAAAGATCTGCAT 249886
Score = 98.7 bits (108), Expect = 1e-15
Identities = 139/193 (72%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| |||| ||| || || |||| || |||||||||||||| ||
Sbjct 250533 CTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCGTCCTCCAGCTGCTTACCAGCAAA 250474
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| || ||||||||||||| || | | |||||||||| ||| || || | |||
Sbjct 250473 GATAAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGCTCTTCA-CGT 250415
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | || || || || || || | |||||||| || || || || ||||| |
Sbjct 250414 TGTCAATGGTATCAGAAGACTCGACTTCAAGAGTGATGGTCTTTCCAGTGAGAGTCTTCA 250355
Query 43171 CAAAGATTTGCAT 43183
| ||||| |||||
Sbjct 250354 CGAAGATCTGCAT 250342
Score = 89.7 bits (98), Expect = 6e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034
||||| || | ||| |||||| || || |||||||| | ||||| || | || ||
Sbjct 250322 ACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGAGAGAGTACGGCCATCCTCA 250263
Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094
|||||||| || ||||| || | ||||||||||| | || | | |||||||||| |
Sbjct 250262 AGCTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGG 250203
Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154
|| || |||| | | | || || ||| || || || | || ||||| |||
Sbjct 250202 ATCTTGGACTTGACATTGTCGATGGTATCTGACGACTCGACCTCAAGGGTAATGGTCTTG 250143
Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| || || ||||| || ||||| |||||
Sbjct 250142 CCAGTCAGGGTCTTGACGAAGATCTGCAT 250114
Score = 86.0 bits (94), Expect = 7e-12
Identities = 124/170 (73%), Gaps = 4/170 (2%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| ||||| ||||| || | || || || | || || |||||||| ||||||||
Sbjct 249849 CTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAA 249790
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110
|| || ||||||||||| | || | | |||||||||| ||| | || | |||| ||
Sbjct 249789 AATAAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCC-TGAATCTTGGACTTGA-CG 249732
Query 43111 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 43159
| | | | |||||| || || || |||| |||||||| ||||| ||
Sbjct 249731 TTGTCAATAGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 249682
>seq96
Length=85826
Score = 96.9 bits (106), Expect = 4e-15
Identities = 141/197 (72%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053
|||| || || ||||| |||| || || || | || || |||||||| |||||||| |
Sbjct 59304 CCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 59363
Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113
| || ||||||||||| | || | || |||||||||| ||| || |||| ||| |
Sbjct 59364 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTG 59422
Query 43114 -CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172
| | |||||| || || || || | ||||| || || ||||| || ||||| ||
Sbjct 59423 TCGATCGTGTCCGAAGACTCGACCTCAAGGGTGATCGTCTTACCCGTAAGGGTCTTAACG 59482
Query 43173 AAGATTTGCATTTTTAC 43189
|| || ||||| || ||
Sbjct 59483 AAAATCTGCATCTTGAC 59499
>seq14
Length=289536
Score = 86.0 bits (94), Expect = 7e-12
Identities = 131/184 (71%), Gaps = 2/184 (1%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || | ||| || || | || || |||||||| ||||||||
Sbjct 256400 CTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAA 256341
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| || ||||||||||| | || | | |||||||||| ||| || |||| |||
Sbjct 256340 GATCAGGCGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 256282
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | ||||| || || || || | |||||||| || ||||| || ||||| |
Sbjct 256281 TGTCGATGGTGTCCGAGGACTCGACCTCCAGGGTGATGGTCTTACCCGTCAGGGTCTTGA 256222
Query 43171 CAAA 43174
| ||
Sbjct 256221 CGAA 256218
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571814991082200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |