Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06-
26] 365 sequences; 25,429,610 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq24 131 1e-25
seq96 98.7 6e-16
seq14 87.8 1e-12
>seq24
Length=264051
Score = 131 bits (144), Expect = 1e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
|| |||||||| | ||| || ||||| ||||||||||| ||||| |||| ||||
Sbjct 250553 AGAACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCGTCC 250494
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|||| |||||| || || || || || |||||||||||| ||| | | |||||||||
Sbjct 250493 TCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCC 250434
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
||||| ||| | | | | || | ||| | || ||||| || | ||||||||
Sbjct 250433 TGGATCTTGCTCTTCACGTTGTCAATGGTATCAGAAGACTCGACTTCAAGAGTGATGGTC 250374
Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| || |||||||| ||||| |||||||||||
Sbjct 250373 TTTCCAGTGAGAGTCTTCACGAAGATCTGCAT 250342
Score = 107 bits (118), Expect = 1e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
|| || ||||| | |||| || ||||| |||||||||||||| || ||| | ||
Sbjct 250097 AGGACAAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCC 250038
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|| | ||||||||| |||||||| || ||||||||||| || | | |||||||||
Sbjct 250037 TCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCC 249978
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
||||| ||| | | | | || | || | || || || || | ||||||||
Sbjct 249977 TGGATCTTGGACTTCACGTTGTCAATGGTGTCAGAGGACTCAACCTCAAGGGTGATGGTC 249918
Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
||||| || || || || ||||||||||||||
Sbjct 249917 TTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 249886
Score = 107 bits (118), Expect = 1e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
|| |||| ||| | ||| || ||||| |||||||| || || || |||| | ||
Sbjct 250325 AGAACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGAGAGAGTACGGCCATCC 250266
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|| | ||||||||| |||||||| | ||||||||||| ||| | | |||||||||
Sbjct 250265 TCAAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCC 250206
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
||||| ||| | || | | || | ||| | ||| ||||| || | || |||||
Sbjct 250205 TGGATCTTGGACTTGACATTGTCGATGGTATCTGACGACTCGACCTCAAGGGTAATGGTC 250146
Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
||||| || || || || || |||||||||||
Sbjct 250145 TTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 250114
Score = 89.7 bits (98), Expect = 3e-13
Identities = 121/169 (72%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258
|| ||||| |||||||||||||| || || | || || | |||||| || ||||||
Sbjct 249848 TCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAA 249789
Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318
|| || ||||||||||| ||| | | ||||||||| ||||| ||| | | |
Sbjct 249788 ATAAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTG 249729
Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGA 34367
| || | |||| || ||||| || | |||||||| ||||||||||
Sbjct 249728 TCAATAGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGA 249680
>seq96
Length=85826
Score = 98.7 bits (108), Expect = 6e-16
Identities = 135/189 (71%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261
||||| ||||||||||| || || ||| | || |||| ||||||||| ||||| ||
Sbjct 59306 TTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 59365
Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321
|| ||||||||||| ||| | || ||||||||| ||||| ||| | | | |
Sbjct 59366 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 59425
Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAG 34381
|||| || | || ||||| || | ||||| || || || || || || || || ||
Sbjct 59426 ATCGTGTCCGAAGACTCGACCTCAAGGGTGATCGTCTTACCCGTAAGGGTCTTAACGAAA 59485
Query 34382 ATCTGCATC 34390
|||||||||
Sbjct 59486 ATCTGCATC 59494
>seq14
Length=289536
Score = 87.8 bits (96), Expect = 1e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
|| |||||||| | ||| || ||||| ||||||||||| ||||| ||| | ||
Sbjct 256420 AGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCC 256361
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|| | ||||||||| ||||| || || ||||||||||| || | | |||||||||
Sbjct 256360 TCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGAGGAATACCCTCCTTGTCC 256301
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
||||| ||| | | | | || | || | || ||||| |||| ||||||||
Sbjct 256300 TGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCCAGGGTGATGGTC 256241
Query 34358 TTGCCGGTGAGAGTTTTCACAAA 34380
|| || || || || || || ||
Sbjct 256240 TTACCCGTCAGGGTCTTGACGAA 256218
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323070562834400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |