Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06-
26] 365 sequences; 25,429,610 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq24 107 2e-18
seq14 104 2e-17
seq96 89.7 4e-13
>seq24
Length=264051
Score = 107 bits (118), Expect = 2e-18
Identities = 139/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
|||||||||||||||||||||| || ||| | || || || || || || |||||
Sbjct 250077 CTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAA 250018
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264
|||| ||||| ||||| ||||| | ||||||||||||| || || ||| ||
Sbjct 250017 AATCAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTGGACTTCACGTT 249958
Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324
| | | |||| ||| ||||| | ||| || |||||||| ||||| ||||| ||
Sbjct 249957 GTCAATGGTGTCAGAGGACTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGAC 249898
Query 45325 AAAGATTTGCAT 45336
|||||| |||||
Sbjct 249897 AAAGATCTGCAT 249886
Score = 86.0 bits (94), Expect = 5e-12
Identities = 91/120 (76%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
||| || ||| |||||||||||||||||||||| || |||| | || || || ||
Sbjct 249861 GTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGACCATCCTCAAGCTG 249802
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
||||| ||||| || | ||||| ||||| || || | ||||||||||||| ||| ||
Sbjct 249801 CTTTCCAGCGAAAATAAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGAATCTT 249742
>seq14
Length=289536
Score = 104 bits (114), Expect = 2e-17
Identities = 143/200 (72%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||| || ||| ||||||||| ||||||||||| ||| ||| | || ||
Sbjct 256417 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTCA 256358
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || ||||| |||| ||||| ||||| ||||| | |||||||||||||
Sbjct 256357 AGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGG 256298
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | ||||| ||| ||||||| ||| || |||||
Sbjct 256297 ATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCCAGGGTGATGGTCTTA 256238
Query 45308 CCCGTCAGAGTCTTCACAAA 45327
|||||||| ||||| || ||
Sbjct 256237 CCCGTCAGGGTCTTGACGAA 256218
>seq96
Length=85826
Score = 89.7 bits (98), Expect = 4e-13
Identities = 136/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206
||||||| ||||||||||| || ||| | || ||||| || || || ||||| |
Sbjct 59304 CCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 59363
Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266
||| ||||| ||||| || || | |||||||||||| || || ||| ||
Sbjct 59364 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT 59423
Query 45267 CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAA 45326
| | ||||| | ||| ||||| | ||| |||||||| ||||| || ||||| || |
Sbjct 59424 CGATCGTGTCCGAAGACTCGACCTCAAGGGTGATCGTCTTACCCGTAAGGGTCTTAACGA 59483
Query 45327 AGATTTGCATGTTG 45340
| || ||||| |||
Sbjct 59484 AAATCTGCATCTTG 59497
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395073442532665
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |