Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06- 26] 365 sequences; 25,429,610 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq59 333 2e-86 seq38 197 1e-45 seq96 96.9 3e-15 seq24 89.7 5e-13 >seq59 Length=151500 Score = 333 bits (368), Expect = 2e-86 Identities = 1221/1892 (65%), Gaps = 46/1892 (2%) Strand=Plus/Plus Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCC 22164 || ||| || || ||||| || | || || | || ||| || || || ||||| || Sbjct 85931 CTGGTCAACAGTGAACTGGATAGGAGCAGCAGCAGCTTGGGTACGCAGGTAGTACATACC 85990 Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG 22224 |||||| ||||| | |||||| || || || || || | || || | || Sbjct 85991 CGTCTTGAGACCGAGCTTCCAACCGGCGAAGTGCATGCTGGTGATCTTACCCATGGTAGG 86050 Query 22225 CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGC 22284 | ||||| | || ||||||||| |||||| ||||| || || |||||||| || Sbjct 86051 GTCCTTCATGTGAATGTTCAACGACTGAGACTGATCAATAAAGGCACCACGATCGGCCGC 86110 Query 22285 CATATTTATCAAT-GTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCT 22343 ||| || | ||| || ||| || || ||||| || ||||||||||| | |||| | Sbjct 86111 CAT-TTGAACAACAGTGCGCTGAGAAATCTCCCAAACCGTCTTGTACAGAGACTTGATGT 86169 Query 22344 CTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAA 22403 | || || ||| |||||| || ||||| | | ||||| || || | Sbjct 86170 CAGCAGGAATGCTGGGGATGTTCTGGATAGAACCGTTGTCGGAAATGATACGGTTCTTCA 86229 Query 22404 TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGG-TTCACCACT 22462 | | ||| ||||| ||| | | | || || | || | |||| || || || Sbjct 86230 TGTTGTCGGACCACAGACCAAGGTCAACCAGGTCACGAAGCA-ACCACGGGTTGACAACC 86288 Query 22463 TGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGAT 22522 || ||||| || | ||| || ||||| |||||||||||||| ||| | || ||||| | Sbjct 86289 TGGAACTCACCAGCCAACACACGGCGCTGGTAAATGTTGGAAGTGTAAGGCTCGAAGCAC 86348 Query 22523 TCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAG 22582 || ||||| ||||| ||||| | ||||| || || ||||| || ||||| || || ||| Sbjct 86349 TCGTTGTTACCCAGAATCTGGGACGTCGAGGCTGTGGGCATAGGGGCCAAAAGAAGGGAG 86408 Query 22583 TTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGG 22640 || | | ||||||| |||| | | || || | |||||||||||| || Sbjct 86409 TTGCGAACACCGTGCTGCTTGATCTGGTCCTTCAAAGAGTT--CCAGTCCCACAGGTCAC 86466 Query 22641 ACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTT 22700 || || |||| ||||||| ||| | || | | || || | || || | Sbjct 86467 TGGGGGTAACAT---CCCACATGTCGAACTGAAGGATACCCTGAGAGACAGGAGAACCCT 86523 Query 22701 CGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGT 22760 |||| || ||| ||||| | | |||| ||||| |||||| | || ||| Sbjct 86524 CGTAGGTCGAGTAGGGACCTTCAAGAATAGCAATATCGCACGACGCCTCGAGGGCAGCGT 86583 Query 22761 AATATATAGTCTCGAAGATTTTCTTGTTCAATTC---GGCGGCGGC-GACGCTTTCGTAC 22816 || || ||||| ||||| | |||||| | | ||| | || ||| || | Sbjct 86584 GGTAAATGGTCTCAAAGATCTGCTTGTTGAGCTGACGGGCCTCAGCAGAC----TCAAAA 86639 Query 22817 GGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGG 22876 ||||| || | || ||| || || |||| ||||||||| || | |||||| || ||| Sbjct 86640 GGCATGCGAAGGGCCAGGAAGGCATCAGCCAGACCCTGAACACCAACACCGATGGGGCGG 86699 Query 22877 TTTTTCAGATTCGACACTTTT----GCCTCGGGCAAAGGATACCAATTCGAATCGATTGT 22932 | || || || || |||||| | || || ||| ||| || | Sbjct 86700 TGGCGCATGTTG----CTGTTACGGGCCTCGATAACGGGGTAGTGGTTCACATCAATAAT 86755 Query 22933 TCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAAC 22992 | ||||||||| | || | || || | | |||||||| Sbjct 86756 GCGGTTCAAGTTGCGAACAACGACCTTGGTGACATCGTGCAGCTTCTGGAAGTCGTAGGA 86815 Query 22993 GCCCGA-TTGTA--CAACAAA--CTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCC 23047 | ||||| ||||||| | | || || | || || || ||||| ||||| Sbjct 86816 GTTGTTGTTGTAGTCAACAAAGGCAGGAAGA--GCAAGAGAAGCCAGGTTGCACACGGCA 86873 Query 23048 ACCTCGTCTTTGGA-CGT-GTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105 ||||| || ||| || |||||| | || || || || || ||| || || | Sbjct 86874 ACCTCATCG--GGAGCGCAGTACTCGATGATCTCAGTGCAAAGGTTGGAACTGCGAATAG 86931 Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165 | |||| || ||||||| || || || ||||| ||||||||| |||||| | || Sbjct 86932 TTCCCAGGTTCTTCTGGTTACTCTTGCGGTTGCAGTGATCCTTGTACAGCATGAAAGGGT 86991 Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTC 23225 | || ||||| ||| | ||| | ||| || ||||| |||| || | || ||| Sbjct 86992 TACCAGTCTCAGTCTGAGCCTCCAAGATAGCATACCACAGCTTCTGGGCCTTAATG-GTC 87050 Query 23226 GCACGTACCTG-CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAA 23284 ||| | | || || | |||||||| || | || |||||||| | || || Sbjct 87051 AGACGGCCACGTCCCTCCTGTTCGTACTTGGTATAGAGAGCCTCAAATTCATCGCCATAG 87110 Query 23285 CAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCA 23344 ||||| |||||||| || | | | || ||||||||| |||| | || || ||| Sbjct 87111 CAGTCAGCCAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTTGCCGTTCTTCTCA 87170 Query 23345 ACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACC 23404 || || |||| || | ||| || ||||| | || ||||| ||||| || || | | Sbjct 87171 ACACGCTTCATGAACAAATCAGGAATCCACAAGGCAAGGAACAAATCGCGAGCACGAATC 87230 Query 23405 TCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGC 23464 ||||| || ||| |||||| | ||| | || || ||||| || || ||||||||| Sbjct 87231 TCCTCCTTACCGTGGTTCTTCCGGAGATCAAGGAACTCGAACACATCAGCGTGCCACGGC 87290 Query 23465 TCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCC 23524 || ||||||| |||||| || || || | ||| || || ||||||||||||||||| || Sbjct 87291 TCCAGGTAAATGGCAAAAGCACCGGGACGCTTGTTACCACCCTGATCGACGTAACGAGCA 87350 Query 23525 GTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCC 23584 || |||||| | || | | ||| || || | |||||| || | ||| ||| || Sbjct 87351 GTATTGTTGAAGACACGCAACATGGGAACAATACCGTTCGAGGTACCGTTGGTGCCAGCA 87410 Query 23585 ACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTC 23644 | ||||| | || || | ||| |||| || ||| ||||| || || || Sbjct 87411 ATGTAAGAACCAGTAGCACGGATACGGTGTACGTTGAGACCAATGCCACCCGCCATCTTG 87470 Query 23645 GATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTC 23704 || ||||| ||||| || || ||||| ||||| || ||||| |||||||| || | Sbjct 87471 GAGATCATAGCGCAAGTCTTGAGGGTGTCATAGATACCTTCGATACTGTCCTCCTTCATG 87530 Query 23705 GCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGG 23764 | |||||||| || ||||| | || | | ||| ||| | || ||| || || || Sbjct 87531 TCTACCAAGAAGCAAGAAGAAAGCTGGGGCTGGGGAGTACCAGCGTTGAAGAGGGTAGGA 87590 Query 23765 CTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTC--GATGGCG-GCATCA 23821 || || || ||| | ||||||| || ||||| || || || || || || Sbjct 87591 GATGCATGAGTGAAGAACTTGCTCGACATGAGGTTGTAAGTTTCCAGAACACGCTCAACA 87650 Query 23822 ATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACC 23881 |||| | | | ||||||| || || ||||| ||||||| ||||| | ||| || Sbjct 87651 TTGTCACCCCAG---ATACCGACAGCTACACGCATAATCATGTGCTGAGGACGCTCAACA 87707 Query 23882 GTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCA 23941 | ||||| || |||| ||||| || | || || || || || ||||| || | Sbjct 87708 ATCTTGCCGTCAAGCTTGAGAAGATAGGATCTTTCCAAGGTCTTGAAACCAAAGTACTGG 87767 Query 23942 TAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 ||||| |||||||| || | || |||||||| Sbjct 87768 TAGTTGAAGTCACGGTCATAGACAATGGCCGA 87799 >seq38 Length=199572 Score = 197 bits (218), Expect = 1e-45 Identities = 595/905 (66%), Gaps = 29/905 (3%) Strand=Plus/Plus Query 57505 CCGATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATC 57564 |||| || || || |||||||||| ||| | || || | || || || | || | Sbjct 76099 CCGACGAGCCCCTCCTGCAAGAGAACCCCAACCGCTTCGTGCTCTTCCCCATCAAGTACC 76158 Query 57565 CAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAG 57624 || || ||| | |||||||| ||||| || || || || ||||| | ||| || | | Sbjct 76159 ATGAGATCTGGCAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCCGAGGAGATTG 76218 Query 57625 ACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCA-----AAGAATCTGAGAGAAATTT 57679 || |||| |||||||| ||| ||| | || || ||| || || | | | | Sbjct 76219 ACTTGTCCAAGGATCTTCACGACTGGAACAACCGCATGACCAAGGAT--GA-ACAGTTCT 76275 Query 57680 T-ATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGG 57738 | || ||||| | || || ||||| || || || |||||||| |||||||| |||| Sbjct 76276 TCATCTCTCACGTCCTTGCCTTCTTCGCTGCCTCTGACGGTATTGTCAACGAGAACTTGG 76335 Query 57739 TCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAG 57798 |||| | || || || ||||| | | ||||| | ||||||||||| || || Sbjct 76336 TCGAGCGTTTCTCTGCCGAGGTGCAGATTCCCGAGGCCCGCTGCTTTTACGGTTTCCAGA 76395 Query 57799 TGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGG 57858 | || || ||| | || || || | ||| || || || |||||||| ||| | |||| Sbjct 76396 TTATGATGGAGAACATTCACTCGGAGACGTACTCCCTCCTGATCGATACCTACATCAAGG 76455 Query 57859 ACAACGACGAG-AAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAG 57917 | | || ||||| ||||||||||| || || || || || ||| | Sbjct 76456 AGCCTGCTCAGCGCACGTA-CCTGTTCAACGCCATTGATACCATTCCTTGCATCCGCCGC 76514 Query 57918 AAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAGAGG 57974 ||||| || ||| | | || ||||| | || || || | || || ||| || | Sbjct 76515 AAGGCCGACTGGGCCCTGAAGTGGAT---TACCGACAAGGAGTCGACCTTTGCCCAGCGT 76571 Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034 || | || || || ||||| || ||||| ||||| || || |||||| | || ||| Sbjct 76572 CTGGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCTCTGGTGCCTTTGCCTCTATCTTT 76631 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094 ||| || || || || |||||||||| |||| || |||||| |||| || || Sbjct 76632 TGGCTGCGCAAGCGTGGTATGATGCCCGGTTTGACCTTCTCAAACGAGCTGATCTCCCGT 76691 Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCG 58154 || |||||||| || || || ||||| ||||| | | ||||||| ||| | ||||| Sbjct 76692 GATGAGGGTCTTCACACCGACTTTGCCTGCCTTCTTTTCTCTCAC-TTG---AACAACCG 76747 Query 58155 AC---GC-GGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTT 58210 | || | | ||| |||||||||||| || || || | ||||| || ||||| Sbjct 76748 CCCTAGCAAGCAGTTGATCCAGGACATTATCACTGATGCCGTTGTTATCGAGAAGGAGTT 76807 Query 58211 TGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTA 58270 | || || || || || || | || ||||||||| ||| | ||| | || Sbjct 76808 CCTTACTGAGGCTCTTCCCTGCGCTCTTCTTGGTATGAACGCTGACCTCATGAAGACTTA 76867 Query 58271 CATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACAAC 58328 ||| ||||| || |||||| | ||| || | | || | || | || ||||| Sbjct 76868 CATCGAGTTCGTCGCCGACCGTCTTCTGGTGGCTCTCGGCAACGACAAGGT--GTACAAG 76925 Query 58329 ACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTC 58388 | || || || || |||||| | ||||| |||| |||||||| ||||| ||| Sbjct 76926 GCTTCTAACCCCTTCGACTTTATGGAAAACATCTCCCTCGGTGGCAAGACCAACTTCTTC 76985 Query 58389 GAAAA 58393 || || Sbjct 76986 GAGAA 76990 >seq96 Length=85826 Score = 96.9 bits (106), Expect = 3e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || || || ||||||||| | || || || | Sbjct 59496 AAGATGCAGATTTTCGTTAAGACCCTTACGGGTAAGACGATCACCCTTGAGGTCGAGTCT 59437 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| |||| | ||||| | || ||||||||| ||| | || || ||| Sbjct 59436 TCGGACACGATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 59377 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || || ||||||||||| ||| |||| || Sbjct 59376 CAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGA 59339 >seq24 Length=264051 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||| ||||| || |||||| | || ||||| | || Sbjct 249886 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGTCCTCT 249945 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || ||||||||| || | || || |||||| Sbjct 249946 GACACCATTGACAACGTGAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAG 250005 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||||||||| ||| | || || || | ||| || ||| Sbjct 250006 CAGCGTCTGATTTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAAC 250065 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || || ||||| || || || ||| | || | || |||| Sbjct 250066 ATTCAGAAGGAGTCTACTCTCCACCTTGTCCTTCGTCTCCGTGGTGGTA 250114 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| || || ||| | || || || |||| Sbjct 250114 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATTACCCTTGAGGTCGAGTCGTCA 250173 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | ||||| | || ||||||||| || | || || |||||| Sbjct 250174 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 250233 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||| | || ||||| ||||| ||| | || || ||| | ||||| ||| Sbjct 250234 CAGCGTTTGATTTTCGCCGGCAAGCAGCTTGAGGATGGCCGTACTCTCTCGGATTACAAC 250293 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || || |||||||| |||| || Sbjct 250294 ATCCAGAAGGAGTCCACTCTTCACTTGGTTCT 250325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764366190800