Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06- 26] 365 sequences; 25,429,610 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq59 210 3e-49 seq38 141 1e-28 >seq59 Length=151500 Score = 210 bits (232), Expect = 3e-49 Identities = 642/983 (65%), Gaps = 26/983 (3%) Strand=Plus/Plus Query 62943 GCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTC 63001 |||| ||| ||||| || |||||||| ||||||| | | | ||| || | || ||||| Sbjct 86847 GCAAGAGAAGCCAGGTTGCACACGGCAACCTCATCGGGAGC-GCAGTACTCGATGATCTC 86905 Query 63002 AGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 63061 ||||||||| || || |||||||| | || | || |||||||| ||| || Sbjct 86906 AGTGCAAAGGTTGGAACTGCGAATAGTTCCCAGGTTCTTCTGGTTACTCTTGCGGTTGCA 86965 Query 63062 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 63121 |||||| || || ||||| || ||||||| ||| |||||| || | || || | Sbjct 86966 GTGATCCTTGTACAGCATGAAAGGGTTACCAGTCTCAGTCTGAGCCTCCAAGATAGCATA 87025 Query 63122 CCAGACGACTC-GAGCCTTTATTAT-AGATTTGTATCTCCTTTCTCTTTCGTATAGAGTA 63179 ||| | | || | ||||| || | ||| | ||| | || || |||| ||| Sbjct 87026 CCACA-GCTTCTGGGCCTTAATGGTCAGACGGCCACGTCCCTCCTGTT-CGTACTTGGTA 87083 Query 63180 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACAC 63239 || | || || || || || | | ||| | ||| || || | || ||| Sbjct 87084 TAGAGAGCCTCAAATTCATCGCCATAGCAGTCAGCCAGGCCAGGGCACTCGTTGGGGCAC 87143 Query 63240 ATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 63299 || | | ||| | |||| | || || || ||||| || | |||||||||||| | Sbjct 87144 ATGAGAGTCCAGTTGCCGTTCTTCTCAACACGCTTCATGAACAAATCAGGAATCCACAAG 87203 Query 63300 GCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 63359 || | || | ||| | | | | ||||| || || ||||| ||||| ||| Sbjct 87204 GCAAGGAACAAATCGCGAGCACGAATCTCCTCCTTACCGTGGTTCTTCCGGAGATCAAGG 87263 Query 63360 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTG 63419 ||| | | | ||||| |||||||| |||| ||| ||||| | | | || || || ||| Sbjct 87264 AACTCGAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACCGGGACGCTTG 87323 Query 63420 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 63479 || || |||||||| | ||| | ||| || || || | || | |||||| |||| |||| Sbjct 87324 TTACCACCCTGATCGACGTAACGAGCAGTATTGTTGAAGACACGCAACATGGGAACAATA 87383 Query 63480 CCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATAT----TACT 63535 ||||| || |||| ||||| || | || || ||| | ||||| ||| ||| Sbjct 87384 CCGTTCGAGGTACCGTTGGTGCCAGCAATGTAAGAACCAGTAGCACGGATACGGTGTACG 87443 Query 63536 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTC 63595 |||| |||| || || || ||||| || ||||| | ||||| || | ||||| Sbjct 87444 --TTGA--GACCAATGCCACCCGCCATCTTGGAGATCATAGCGCAAGTCTTGAGGGTGTC 87499 Query 63596 ATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 63655 |||||| ||||| || || || || |||||| | | || || ||| | ||| | Sbjct 87500 ATAGATACCTTCGATACTGTCCTCCTTCATGTCTACCAAGAAGCAAGAAGAAAGCTGGGG 87559 Query 63656 ACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG 63715 | | ||| || || || || | ||||||||| || || || || | || || | Sbjct 87560 CTGGGGAGTACCAGCGTTGAAGAGGGTAGGAGATGCATGAGTGAAGAACTTGCTCGACAT 87619 Query 63716 TAGATTGTACGTCTCAATAGCTGAGTCTATAT------CCCATTGATGAATTCCTACTGC 63769 || ||||| || || | | | || | || |||| || || || || Sbjct 87620 GAGGTTGTAAGTTTCCAGAACACGCTCAACATTGTCACCCCA------GATACCGACAGC 87673 Query 63770 GACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTA 63829 |||||||| | |||||||||||| | |||||||| ||| || | || | | || Sbjct 87674 TACACGCATAATCATGTGCTGAGGACGCTCAACAATCTTGCCGTCAAGCTTGAGAAGATA 87733 Query 63830 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 |||| ||||||| || || |||||||| || | ||| ||||| || || || | ||| Sbjct 87734 GGATCTTTCCAAGGTCTTGAAACCAAAGTACTGGTAGTTGAAGTCACGGTCATAGACAAT 87793 Query 63890 AACCGAATTGAGCTTATCCTTAT 63912 |||| | |||| ||||||| Sbjct 87794 GGCCGAGTCCAGCTCTTCCTTAT 87816 >seq38 Length=199572 Score = 141 bits (156), Expect = 1e-28 Identities = 381/578 (66%), Gaps = 6/578 (1%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || || ||| ||| |||||||| || | || | ||||| || || || | Sbjct 76720 CAGGCAAAGTCGGTGTGAAGACCCTCATCACGGGAGATCAGCTCGTTTGAGAAGGTCAAA 76661 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| | |||||||| |||||||| || || || || | || || |||||| Sbjct 76660 CCGGGCATCATACCACGCTTGCGCAGCCAAAAGATAGAGGCAAAGGCACCAGAGAAGAAG 76601 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA-ACCGGCGC--TGTCATGT 33758 || || || || ||||||||||||| || | || || | || | | |||| Sbjct 76600 ATACCCTCAACGGCAGCAAAGGCAACCAGACGCTGGGCAAAGGTCGACTCCTTGTCGGTA 76541 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 |||||||| | ||||| |||||||| | ||||| || || || ||||| || Sbjct 76540 ATCCACTTCAGGGCCCAGTCGGCCTTGCGGCGGATGCAAGGAATGGTATCAATGGCGTTG 76481 Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878 || || || | | | | || || | || |||||||||| || ||| | Sbjct 76480 AACAGGTACGTGCGCTGAGCAGGCTCCTTGATGTAGGTATCGATCAGGAGGGAGTACGTC 76421 Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938 ||||| |||||||| || || ||||| || ||||| || || | ||||||| |||| Sbjct 76420 TCCGAGTGAATGTTCTCCATCATAATCTGGAAACCGTAAAAGCAGCGGGCCTCGGGAATC 76361 Query 33939 TGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998 ||||| || | | | || || || | || || || || || || || ||| ||| || Sbjct 76360 TGCACCTCGGCAGAGAAACGCTCGACCAAGTTCTCGTTGACAATACCGTCAGAGGCAGCG 76301 Query 33999 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--TGGT-GTTAGTTTATTCCAA 34055 || || || | || || || || | | ||| || |||| | | || ||||| Sbjct 76300 AAGAAGGCAAGGACGTGAGAGATGAAGAACTGTTCATCCTTGGTCATGCGGTTGTTCCAG 76241 Query 34056 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 34115 || | | ||| || || | || | || || | ||||| || || ||||| ||||| Sbjct 76240 TCGTGAAGATCCTTGGACAAGTCAATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTTC 76181 Query 34116 TTATACATATTCCAGATGTCATGATATTGGATTGGGAA 34153 || ||||| | |||||| ||||| || | ||| ||||| Sbjct 76180 TTGTACATTTGCCAGATCTCATGGTACTTGATGGGGAA 76143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629814726457200