Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06-
26] 365 sequences; 25,429,610 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq59 210 3e-49
seq38 141 1e-28
>seq59
Length=151500
Score = 210 bits (232), Expect = 3e-49
Identities = 642/983 (65%), Gaps = 26/983 (3%)
Strand=Plus/Plus
Query 62943 GCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTC 63001
|||| ||| ||||| || |||||||| ||||||| | | | ||| || | || |||||
Sbjct 86847 GCAAGAGAAGCCAGGTTGCACACGGCAACCTCATCGGGAGC-GCAGTACTCGATGATCTC 86905
Query 63002 AGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 63061
||||||||| || || |||||||| | || | || |||||||| ||| ||
Sbjct 86906 AGTGCAAAGGTTGGAACTGCGAATAGTTCCCAGGTTCTTCTGGTTACTCTTGCGGTTGCA 86965
Query 63062 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 63121
|||||| || || ||||| || ||||||| ||| |||||| || | || || |
Sbjct 86966 GTGATCCTTGTACAGCATGAAAGGGTTACCAGTCTCAGTCTGAGCCTCCAAGATAGCATA 87025
Query 63122 CCAGACGACTC-GAGCCTTTATTAT-AGATTTGTATCTCCTTTCTCTTTCGTATAGAGTA 63179
||| | | || | ||||| || | ||| | ||| | || || |||| |||
Sbjct 87026 CCACA-GCTTCTGGGCCTTAATGGTCAGACGGCCACGTCCCTCCTGTT-CGTACTTGGTA 87083
Query 63180 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACAC 63239
|| | || || || || || | | ||| | ||| || || | || |||
Sbjct 87084 TAGAGAGCCTCAAATTCATCGCCATAGCAGTCAGCCAGGCCAGGGCACTCGTTGGGGCAC 87143
Query 63240 ATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 63299
|| | | ||| | |||| | || || || ||||| || | |||||||||||| |
Sbjct 87144 ATGAGAGTCCAGTTGCCGTTCTTCTCAACACGCTTCATGAACAAATCAGGAATCCACAAG 87203
Query 63300 GCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 63359
|| | || | ||| | | | | ||||| || || ||||| ||||| |||
Sbjct 87204 GCAAGGAACAAATCGCGAGCACGAATCTCCTCCTTACCGTGGTTCTTCCGGAGATCAAGG 87263
Query 63360 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTG 63419
||| | | | ||||| |||||||| |||| ||| ||||| | | | || || || |||
Sbjct 87264 AACTCGAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACCGGGACGCTTG 87323
Query 63420 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 63479
|| || |||||||| | ||| | ||| || || || | || | |||||| |||| ||||
Sbjct 87324 TTACCACCCTGATCGACGTAACGAGCAGTATTGTTGAAGACACGCAACATGGGAACAATA 87383
Query 63480 CCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATAT----TACT 63535
||||| || |||| ||||| || | || || ||| | ||||| ||| |||
Sbjct 87384 CCGTTCGAGGTACCGTTGGTGCCAGCAATGTAAGAACCAGTAGCACGGATACGGTGTACG 87443
Query 63536 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTC 63595
|||| |||| || || || ||||| || ||||| | ||||| || | |||||
Sbjct 87444 --TTGA--GACCAATGCCACCCGCCATCTTGGAGATCATAGCGCAAGTCTTGAGGGTGTC 87499
Query 63596 ATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 63655
|||||| ||||| || || || || |||||| | | || || ||| | ||| |
Sbjct 87500 ATAGATACCTTCGATACTGTCCTCCTTCATGTCTACCAAGAAGCAAGAAGAAAGCTGGGG 87559
Query 63656 ACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG 63715
| | ||| || || || || | ||||||||| || || || || | || || |
Sbjct 87560 CTGGGGAGTACCAGCGTTGAAGAGGGTAGGAGATGCATGAGTGAAGAACTTGCTCGACAT 87619
Query 63716 TAGATTGTACGTCTCAATAGCTGAGTCTATAT------CCCATTGATGAATTCCTACTGC 63769
|| ||||| || || | | | || | || |||| || || || ||
Sbjct 87620 GAGGTTGTAAGTTTCCAGAACACGCTCAACATTGTCACCCCA------GATACCGACAGC 87673
Query 63770 GACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTA 63829
|||||||| | |||||||||||| | |||||||| ||| || | || | | ||
Sbjct 87674 TACACGCATAATCATGTGCTGAGGACGCTCAACAATCTTGCCGTCAAGCTTGAGAAGATA 87733
Query 63830 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889
|||| ||||||| || || |||||||| || | ||| ||||| || || || | |||
Sbjct 87734 GGATCTTTCCAAGGTCTTGAAACCAAAGTACTGGTAGTTGAAGTCACGGTCATAGACAAT 87793
Query 63890 AACCGAATTGAGCTTATCCTTAT 63912
|||| | |||| |||||||
Sbjct 87794 GGCCGAGTCCAGCTCTTCCTTAT 87816
>seq38
Length=199572
Score = 141 bits (156), Expect = 1e-28
Identities = 381/578 (66%), Gaps = 6/578 (1%)
Strand=Plus/Minus
Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641
|| || || ||| ||| |||||||| || | || | ||||| || || || |
Sbjct 76720 CAGGCAAAGTCGGTGTGAAGACCCTCATCACGGGAGATCAGCTCGTTTGAGAAGGTCAAA 76661
Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701
|||||||| | |||||||| |||||||| || || || || | || || ||||||
Sbjct 76660 CCGGGCATCATACCACGCTTGCGCAGCCAAAAGATAGAGGCAAAGGCACCAGAGAAGAAG 76601
Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA-ACCGGCGC--TGTCATGT 33758
|| || || || ||||||||||||| || | || || | || | | ||||
Sbjct 76600 ATACCCTCAACGGCAGCAAAGGCAACCAGACGCTGGGCAAAGGTCGACTCCTTGTCGGTA 76541
Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818
|||||||| | ||||| |||||||| | ||||| || || || ||||| ||
Sbjct 76540 ATCCACTTCAGGGCCCAGTCGGCCTTGCGGCGGATGCAAGGAATGGTATCAATGGCGTTG 76481
Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878
|| || || | | | | || || | || |||||||||| || ||| |
Sbjct 76480 AACAGGTACGTGCGCTGAGCAGGCTCCTTGATGTAGGTATCGATCAGGAGGGAGTACGTC 76421
Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938
||||| |||||||| || || ||||| || ||||| || || | ||||||| ||||
Sbjct 76420 TCCGAGTGAATGTTCTCCATCATAATCTGGAAACCGTAAAAGCAGCGGGCCTCGGGAATC 76361
Query 33939 TGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998
||||| || | | | || || || | || || || || || || || ||| ||| ||
Sbjct 76360 TGCACCTCGGCAGAGAAACGCTCGACCAAGTTCTCGTTGACAATACCGTCAGAGGCAGCG 76301
Query 33999 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--TGGT-GTTAGTTTATTCCAA 34055
|| || || | || || || || | | ||| || |||| | | || |||||
Sbjct 76300 AAGAAGGCAAGGACGTGAGAGATGAAGAACTGTTCATCCTTGGTCATGCGGTTGTTCCAG 76241
Query 34056 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 34115
|| | | ||| || || | || | || || | ||||| || || ||||| |||||
Sbjct 76240 TCGTGAAGATCCTTGGACAAGTCAATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTTC 76181
Query 34116 TTATACATATTCCAGATGTCATGATATTGGATTGGGAA 34153
|| ||||| | |||||| ||||| || | ||| |||||
Sbjct 76180 TTGTACATTTGCCAGATCTCATGGTACTTGATGGGGAA 76143
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629814726457200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |