Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06- 26] 365 sequences; 25,429,610 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq59 192 8e-44 seq38 159 5e-34 >seq59 Length=151500 Score = 192 bits (212), Expect = 8e-44 Identities = 635/978 (65%), Gaps = 26/978 (3%) Strand=Plus/Plus Query 79620 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATTTCAGTGC 79678 ||| ||||| || || ||||| ||||||| | | | ||| || | || || ||||||| Sbjct 86852 AGAAGCCAGGTTGCACACGGCAACCTCATCGGGAGC-GCAGTACTCGATGATCTCAGTGC 86910 Query 79679 AGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 79738 | ||||| || ||| ||||| | || | || |||||||| ||| || || Sbjct 86911 AAAGGTTGGAACTGCGAATAGTTCCCAGGTTCTTCTGGTTACTCTTGCGGTTGCAGTGAT 86970 Query 79739 CCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 79798 |||| || || ||||| || ||||||| ||| |||||| || | || || | ||| | Sbjct 86971 CCTTGTACAGCATGAAAGGGTTACCAGTCTCAGTCTGAGCCTCCAAGATAGCATACCACA 87030 Query 79799 CGACTC-GAGCCTTTATTAT-AGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAA 79856 | || | ||||| || | |||| | || | || || |||| | ||||| | Sbjct 87031 -GCTTCTGGGCCTTAATGGTCAGACGGCCACGTCCCTCCTGTT-CGTACTTGGTATAGAG 87088 Query 79857 TCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAA 79916 || || || || || | || | | ||||| || |||| || ||||| | Sbjct 87089 AGCCTCAAATTCATCGCCATAGCAGTCAGCCAGGCCAGGGCACTCGTTGGGGCACATGAG 87148 Query 79917 CGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 79976 | ||| | || | | || || || ||||| || | |||||||||||| | || | Sbjct 87149 AGTCCAGTTGCCGTTCTTCTCAACACGCTTCATGAACAAATCAGGAATCCACAAGGCAAG 87208 Query 79977 AAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 80036 || | ||| | | | | |||||| || || ||||| ||||| |||||| | Sbjct 87209 GAACAAATCGCGAGCACGAATCTCCTCCTTACCGTGGTTCTTCCGGAGATCAAGGAACTC 87268 Query 80037 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCC 80096 | | ||||| |||||||| |||| ||| ||||| | | | || || || ||||| || Sbjct 87269 GAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACCGGGACGCTTGTTACC 87328 Query 80097 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 80156 |||||||| | ||| | ||| || || || | || | |||||| |||| |||||| || Sbjct 87329 ACCCTGATCGACGTAACGAGCAGTATTGTTGAAGACACGCAACATGGGAACAATACCGTT 87388 Query 80157 GGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA----TTACTAATTG 80212 || ||||| ||||| || | || || ||| | ||||| ||| ||| ||| Sbjct 87389 CGAGGTACCGTTGGTGCCAGCAATGTAAGAACCAGTAGCACGGATACGGTGTAC--GTTG 87446 Query 80213 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 80272 ||||| || || || ||||| || ||||| | ||||| || | || ||||||| Sbjct 87447 --AGACCAATGCCACCCGCCATCTTGGAGATCATAGCGCAAGTCTTGAGGGTGTCATAGA 87504 Query 80273 TGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 80332 | || || || || || || |||||| | | || || ||| | ||| | | Sbjct 87505 TACCTTCGATACTGTCCTCCTTCATGTCTACCAAGAAGCAAGAAGAAAGCTGGGGCTGGG 87564 Query 80333 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGAT 80392 ||| || || || || | ||||||||| || || || || | || |||| || | Sbjct 87565 GAGTACCAGCGTTGAAGAGGGTAGGAGATGCATGAGTGAAGAACTTGCTCGACATGAGGT 87624 Query 80393 TGTACGTCTCAATAGCTGATTCTATAT------CCCATTGATGAATTCCTACCGCGACAC 80446 |||| || || | | | || | || |||| || || || || |||| Sbjct 87625 TGTAAGTTTCCAGAACACGCTCAACATTGTCACCCCA------GATACCGACAGCTACAC 87678 Query 80447 GCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATT 80506 |||| | |||||||||||| | ||||| |||||| | | || | | || ||| Sbjct 87679 GCATAATCATGTGCTGAGGACGCTCAACAATCTTGCCGTCAAGCTTGAGAAGATAGGATC 87738 Query 80507 TTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCG 80566 ||||||| || || |||||||| || | ||| ||||| || || || | ||| ||| Sbjct 87739 TTTCCAAGGTCTTGAAACCAAAGTACTGGTAGTTGAAGTCACGGTCATAGACAATGGCCG 87798 Query 80567 AGTTGAGTTTATCCTTAT 80584 ||| || | ||||||| Sbjct 87799 AGTCCAGCTCTTCCTTAT 87816 >seq38 Length=199572 Score = 159 bits (176), Expect = 5e-34 Identities = 383/578 (66%), Gaps = 6/578 (1%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || ||| ||| |||||||| || | || || ||||| || || || | Sbjct 76720 CAGGCAAAGTCGGTGTGAAGACCCTCATCACGGGAGATCAGCTCGTTTGAGAAGGTCAAA 76661 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 |||||||| | |||||||| |||||||| || || ||||| | ||||| |||||| Sbjct 76660 CCGGGCATCATACCACGCTTGCGCAGCCAAAAGATAGAGGCAAAGGCACCAGAGAAGAAG 76601 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGT 50136 || || || || || ||||||||||| || | || || | | | | |||| Sbjct 76600 ATACCCTCAACGGCAGCAAAGGCAACCAGACGCTGGGCAAAGGTCGACTCCTTGTCGGTA 76541 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 |||||||| | ||||| |||||||| | ||||| || || || ||||| || Sbjct 76540 ATCCACTTCAGGGCCCAGTCGGCCTTGCGGCGGATGCAAGGAATGGTATCAATGGCGTTG 76481 Query 50197 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 50256 || || || | | | | || || | || |||||||||| || ||| | Sbjct 76480 AACAGGTACGTGCGCTGAGCAGGCTCCTTGATGTAGGTATCGATCAGGAGGGAGTACGTC 76421 Query 50257 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 50316 ||||| |||||||| || || ||||| || ||||| || || | ||||||| |||| Sbjct 76420 TCCGAGTGAATGTTCTCCATCATAATCTGGAAACCGTAAAAGCAGCGGGCCTCGGGAATC 76361 Query 50317 TGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 50376 ||||| || | | | || || || | || || || || || || |||||| ||| || Sbjct 76360 TGCACCTCGGCAGAGAAACGCTCGACCAAGTTCTCGTTGACAATACCGTCAGAGGCAGCG 76301 Query 50377 AAAAACGCCAATACATG---TTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAA 50433 || || || | || || | | || |||| || |||| | | || ||||| Sbjct 76300 AAGAAGGCAAGGACGTGAGAGATGAAGAACTGTTCATCCTTGGTCATGCGGTTGTTCCAG 76241 Query 50434 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 50493 || | | ||| || || | || | || || | ||||| || || ||||| ||||| Sbjct 76240 TCGTGAAGATCCTTGGACAAGTCAATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTTC 76181 Query 50494 TTATACATATTCCAGATGTCATGATATTGGATTGGGAA 50531 || ||||| | |||||| ||||| || | ||| ||||| Sbjct 76180 TTGTACATTTGCCAGATCTCATGGTACTTGATGGGGAA 76143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718265522898600