Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06- 26] 365 sequences; 25,429,610 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq59 176 6e-39 seq38 145 1e-29 >seq59 Length=151500 Score = 176 bits (194), Expect = 6e-39 Identities = 633/981 (65%), Gaps = 22/981 (2%) Strand=Plus/Plus Query 71698 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCA 71757 |||| ||| ||||| || || ||||| ||||||| | | || || | || || ||| Sbjct 86847 GCAAGAGAAGCCAGGTTGCACACGGCAACCTCATCGGGAGCGCAGTACTCGATGATCTCA 86906 Query 71758 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 71817 |||||||| || || || ||||| | || | || |||||||| ||| || Sbjct 86907 GTGCAAAGGTTGGAACTGCGAATAGTTCCCAGGTTCTTCTGGTTACTCTTGCGGTTGCAG 86966 Query 71818 GCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 71877 |||||| || || || || || ||||||| ||| |||||| || | || || | | Sbjct 86967 TGATCCTTGTACAGCATGAAAGGGTTACCAGTCTCAGTCTGAGCCTCCAAGATAGCATAC 87026 Query 71878 CAGACGACTC-GAGCCTTTATTAT-ATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTAT 71935 || | | || | ||||| || | | | | || | || || |||| | |||| Sbjct 87027 CACA-GCTTCTGGGCCTTAATGGTCAGACGGCCACGTCCCTCCTGTT-CGTACTTGGTAT 87084 Query 71936 ATAATCGTTCGAACTCGTCTCCCCAAGCATTGT-CTAATCCAGGACATTCATTCGGACAC 71994 | | || || || || || | ||| | | | ||||| || || || || ||| Sbjct 87085 AGAGAGCCTCAAATTCATCGCCATA-GCAGTCAGCCAGGCCAGGGCACTCGTTGGGGCAC 87143 Query 71995 ATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 72054 || | | ||| | || | | | || || ||||| || | |||||||||||| | Sbjct 87144 ATGAGAGTCCAGTTGCCGTTCTTCTCAACACGCTTCATGAACAAATCAGGAATCCACAAG 87203 Query 72055 GCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 72114 || | || | ||| | | | | |||||| || || ||||| ||||| ||| Sbjct 87204 GCAAGGAACAAATCGCGAGCACGAATCTCCTCCTTACCGTGGTTCTTCCGGAGATCAAGG 87263 Query 72115 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTG 72174 ||| | | | ||||| |||||||| |||| ||| ||||| | | | || || || ||| Sbjct 87264 AACTCGAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACCGGGACGCTTG 87323 Query 72175 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 72234 || || |||||||| | ||| | ||| || || || | || | |||||| |||| |||| Sbjct 87324 TTACCACCCTGATCGACGTAACGAGCAGTATTGTTGAAGACACGCAACATGGGAACAATA 87383 Query 72235 CCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA--TTGCTAA 72292 || || || | ||| ||||| || | || || ||| | ||||| ||| || Sbjct 87384 CCGTTCGAGGTACCGTTGGTGCCAGCAATGTAAGAACCAGTAGCACGGATACGGTGTACG 87443 Query 72293 TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCAT 72352 ||| ||||| || || || ||||| || ||||| | ||||| || | || |||| Sbjct 87444 TTG--AGACCAATGCCACCCGCCATCTTGGAGATCATAGCGCAAGTCTTGAGGGTGTCAT 87501 Query 72353 AGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 72412 |||| || || ||||| || ||| |||||| | | || || ||| | ||| | Sbjct 87502 AGATACCTTCGATACTGTCCTCCTTCATGTCTACCAAGAAGCAAGAAGAAAGCTGGGGCT 87561 Query 72413 GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTA 72472 | ||| || || || || | ||||||||| || || || || | || |||| | Sbjct 87562 GGGGAGTACCAGCGTTGAAGAGGGTAGGAGATGCATGAGTGAAGAACTTGCTCGACATGA 87621 Query 72473 GATTGTACGTCTCAATAGCTGATTCTATAT------CCCATTGATGTATTCCTACCGCGA 72526 | ||||| || || | | | || | || |||| || || || || | Sbjct 87622 GGTTGTAAGTTTCCAGAACACGCTCAACATTGTCACCCCA------GATACCGACAGCTA 87675 Query 72527 CACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGG 72586 ||||||| | ||| |||||||| | ||||| |||||| | | || | | |||| Sbjct 87676 CACGCATAATCATGTGCTGAGGACGCTCAACAATCTTGCCGTCAAGCTTGAGAAGATAGG 87735 Query 72587 ATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAA 72646 || ||||||| || || |||||||| || | ||| ||||| || || || | ||| Sbjct 87736 ATCTTTCCAAGGTCTTGAAACCAAAGTACTGGTAGTTGAAGTCACGGTCATAGACAATGG 87795 Query 72647 CCGAATTGAGTTTATCCTTAT 72667 |||| | || | ||||||| Sbjct 87796 CCGAGTCCAGCTCTTCCTTAT 87816 >seq38 Length=199572 Score = 145 bits (160), Expect = 1e-29 Identities = 382/579 (66%), Gaps = 8/579 (1%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || || ||| ||| ||||||||||| | || | ||||| || || || | Sbjct 76720 CAGGCAAAGTCGGTGTGAAGACCCTCATCACGGGAGATCAGCTCGTTTGAGAAGGTCAAA 76661 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 |||||||| | |||||||| |||||||| ||||| ||||| | ||||| |||||| Sbjct 76660 CCGGGCATCATACCACGCTTGCGCAGCCAAAAGATAGAGGCAAAGGCACCAGAGAAGAAG 76601 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA-ACCGGCAC--TGTCATGT 42241 || || || || || |||||||||| || | || || | || | | |||| Sbjct 76600 ATACCCTCAACGGCAGCAAAGGCAACCAGACGCTGGGCAAAGGTCGACTCCTTGTCGGTA 76541 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 |||||||| | ||||| |||||||| | ||||| || || || ||||| || Sbjct 76540 ATCCACTTCAGGGCCCAGTCGGCCTTGCGGCGGATGCAAGGAATGGTATCAATGGCGTTG 76481 Query 42302 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATT 42361 || || || | | | | || || | || |||||||||| || ||| | Sbjct 76480 AACAGGTACGTGCGCTGAGCAGGCTCCTTGATGTAGGTATCGATCAGGAGGGAGTACGTC 76421 Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACC 42421 || || |||||||| || || ||||| || ||||| || || | |||||||| || | Sbjct 76420 TCCGAGTGAATGTTCTCCATCATAATCTGGAAACCGTAAAAGCAGCGGGCCTCGGGAATC 76361 Query 42422 TGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCA 42481 || || || | | | || || || | || || ||||| || || |||||| ||| || Sbjct 76360 TGCACCTCGGCAGAGAAACGCTCGACCAAGTTCTCGTTGACAATACCGTCAGAGGCAGCG 76301 Query 42482 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAAT----TTATTCCA 42537 || || || | || || || || | | ||| ||| || | || || ||||| Sbjct 76300 AAGAAGGCAAGGACGTGAGAGATGAAGAACTGTTCATCC-TTGGTCATGCGGTTGTTCCA 76242 Query 42538 ATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTT 42597 || | | ||| || || | || | || || | ||||| || || || || ||||| Sbjct 76241 GTCGTGAAGATCCTTGGACAAGTCAATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTT 76182 Query 42598 TTTATACATATTCCAGATATCATGATATTGAATTGGGAA 42636 || ||||| | |||||| ||||| || | || ||||| Sbjct 76181 CTTGTACATTTGCCAGATCTCATGGTACTTGATGGGGAA 76143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671136137927400