Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06-
26] 365 sequences; 25,429,610 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq38 185 1e-41
seq59 120 5e-22
>seq38
Length=199572
Score = 185 bits (204), Expect = 1e-41
Identities = 391/582 (67%), Gaps = 6/582 (1%)
Strand=Plus/Plus
Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054
|| || ||||||| ||| ||||| || ||| |||||||||| ||||| ||||||| ||
Sbjct 76140 CTCTTCCCCATCAAGTACCATGAGATCTGGCAAATGTACAAGAAGGCCGAGGCCTCTTTC 76199
Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114
||||| | ||| ||| | || |||||||||| || |||| ||| | | || ||||
Sbjct 76200 TGGACTGCCGAGGAGATTGACTTGTCCAAGGATCTTCACGACTGGAACAACCGCATGACC 76259
Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174
| ||| | || || || ||| | | |||||||| || | ||| || || ||
Sbjct 76260 AAGGATGAACAGTTCTTCATCTCTCACGTCCTTGCCTTCTTCGCTGCCTCTGACGGTATT 76319
Query 125175 GTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGC 125234
|||||||| || || | || |||||| ||| || ||||| |||| |||
Sbjct 76320 GTCAACGAGAACTTGGTCGAGCGTTTCTCTGCCGAGGTGCAGATTCCCGAGGCCCGCTGC 76379
Query 125235 TTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATT 125294
|||||||| ||||| || ||||| |||||| | |||||||| | |||||| |||||
Sbjct 76380 TTTTACGGTTTCCAGATTATGATGGAGAACATTCACTCGGAGACGTACTCCCTCCTGATC 76439
Query 125295 GACATGTACATTCGCGA---TCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACG 125351
|| | ||||| || | | || || | || || || ||||| || || ||
Sbjct 76440 GATACCTACATCAAGGAGCCTGCTCAGCGCACGTAC---CTGTTCAACGCCATTGATACC 76496
Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCT 125411
| || | || || ||||| | |||| | |||||| ||| | ||||
Sbjct 76497 ATTCCTTGCATCCGCCGCAAGGCCGACTGGGCCCTGAAGTGGATTACCGACAAGGAGTCG 76556
Query 125412 TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGT 125471
| | ||| | | ||||| || || || ||||| ||||| |||||||| || |||
Sbjct 76557 ACCTTTGCCCAGCGTCTGGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCTCTGGTGCC 76616
Query 125472 TTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAAC 125531
||||| | ||||||||||| ||||| || | |||||||| |||| | |||
Sbjct 76617 TTTGCCTCTATCTTTTGGCTGCGCAAGCGTGGTATGATGCCCGGTTTGACCTTCTCAAAC 76676
Query 125532 GAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573
||| | || || || || ||||| || ||| |||||||||
Sbjct 76677 GAGCTGATCTCCCGTGATGAGGGTCTTCACACCGACTTTGCC 76718
>seq59
Length=151500
Score = 120 bits (132), Expect = 5e-22
Identities = 319/484 (66%), Gaps = 4/484 (1%)
Strand=Plus/Minus
Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935
||||| || || || || || || ||| | ||| | ||| |||| || |||||||| ||
Sbjct 87334 CAGGGTGGTAACAAGCGTCCCGGTGCTTTTGCCATTTACCTGGAGCCGTGGCACGCTGAT 87275
Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995
|| || || || | || | || || ||| || || ||| || || | ||
Sbjct 87274 GTGTTCGAGTTCCTTGATCTCCGGAAGAACCACGGTAAGGAGGAGATTCGTGCTCGCGAT 87215
Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055
||||| ||| | ||| | || ||||||||||||||||| || | | ||| ||
Sbjct 87214 TTGTTCCTTGCCTTGTGGATTCCTGATTTGTTCATGAAGCGTGTTGAGAAGAACGGCAAC 87155
Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115
|||| || ||||||||| || || || || ||| | || |||| ||||| || |||
Sbjct 87154 TGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTGGCTGACTGCTATGGCGATGAATTT 87095
Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAGTCGATGCACG 97174
||||| || || ||||| || ||||| || ||| ||| | | | | |
Sbjct 87094 GAGGCTCTCTATACCAAGTACGAACAGGAGGGACGTGGCCGTCTGACCATT--AAGGCCC 87037
Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233
|||| |||||| | || ||| || ||||||| |||||||| | || | ||| || |
Sbjct 87036 AGAAGCTGTGGTATGCTATCTTGGAGGCTCAGACTGAGACTGGTAACCCTTTCATGCTGT 86977
Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293
|||||||| | || ||||| || ||||| || |||| || || | ||||
Sbjct 86976 ACAAGGATCACTGCAACCGCAAGAGTAACCAGAAGAACCTGGGAACTATTCGCAGTTCCA 86917
Query 97294 ATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGG 97353
| || ||||| || || | |||||| | |||| || ||| || || ||| ||||
Sbjct 86916 ACCTTTGCACTGAGATCATCGAGTACTGCGCTCCCGATGAGGTTGCCGTGTGCAACCTGG 86857
Query 97354 CATC 97357
| ||
Sbjct 86856 CTTC 86853
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741055818917400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |