Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06- 26] 365 sequences; 25,429,610 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq38 185 1e-41 seq59 120 5e-22 >seq38 Length=199572 Score = 185 bits (204), Expect = 1e-41 Identities = 391/582 (67%), Gaps = 6/582 (1%) Strand=Plus/Plus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 || || ||||||| ||| ||||| || ||| |||||||||| ||||| ||||||| || Sbjct 76140 CTCTTCCCCATCAAGTACCATGAGATCTGGCAAATGTACAAGAAGGCCGAGGCCTCTTTC 76199 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||| | ||| ||| | || |||||||||| || |||| ||| | | || |||| Sbjct 76200 TGGACTGCCGAGGAGATTGACTTGTCCAAGGATCTTCACGACTGGAACAACCGCATGACC 76259 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 | ||| | || || || ||| | | |||||||| || | ||| || || || Sbjct 76260 AAGGATGAACAGTTCTTCATCTCTCACGTCCTTGCCTTCTTCGCTGCCTCTGACGGTATT 76319 Query 125175 GTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGC 125234 |||||||| || || | || |||||| ||| || ||||| |||| ||| Sbjct 76320 GTCAACGAGAACTTGGTCGAGCGTTTCTCTGCCGAGGTGCAGATTCCCGAGGCCCGCTGC 76379 Query 125235 TTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATT 125294 |||||||| ||||| || ||||| |||||| | |||||||| | |||||| ||||| Sbjct 76380 TTTTACGGTTTCCAGATTATGATGGAGAACATTCACTCGGAGACGTACTCCCTCCTGATC 76439 Query 125295 GACATGTACATTCGCGA---TCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACG 125351 || | ||||| || | | || || | || || || ||||| || || || Sbjct 76440 GATACCTACATCAAGGAGCCTGCTCAGCGCACGTAC---CTGTTCAACGCCATTGATACC 76496 Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCT 125411 | || | || || ||||| | |||| | |||||| ||| | |||| Sbjct 76497 ATTCCTTGCATCCGCCGCAAGGCCGACTGGGCCCTGAAGTGGATTACCGACAAGGAGTCG 76556 Query 125412 TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGT 125471 | | ||| | | ||||| || || || ||||| ||||| |||||||| || ||| Sbjct 76557 ACCTTTGCCCAGCGTCTGGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCTCTGGTGCC 76616 Query 125472 TTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAAC 125531 ||||| | ||||||||||| ||||| || | |||||||| |||| | ||| Sbjct 76617 TTTGCCTCTATCTTTTGGCTGCGCAAGCGTGGTATGATGCCCGGTTTGACCTTCTCAAAC 76676 Query 125532 GAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 ||| | || || || || ||||| || ||| ||||||||| Sbjct 76677 GAGCTGATCTCCCGTGATGAGGGTCTTCACACCGACTTTGCC 76718 >seq59 Length=151500 Score = 120 bits (132), Expect = 5e-22 Identities = 319/484 (66%), Gaps = 4/484 (1%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| || || || || || || ||| | ||| | ||| |||| || |||||||| || Sbjct 87334 CAGGGTGGTAACAAGCGTCCCGGTGCTTTTGCCATTTACCTGGAGCCGTGGCACGCTGAT 87275 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || || | || | || || ||| || || ||| || || | || Sbjct 87274 GTGTTCGAGTTCCTTGATCTCCGGAAGAACCACGGTAAGGAGGAGATTCGTGCTCGCGAT 87215 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 ||||| ||| | ||| | || ||||||||||||||||| || | | ||| || Sbjct 87214 TTGTTCCTTGCCTTGTGGATTCCTGATTTGTTCATGAAGCGTGTTGAGAAGAACGGCAAC 87155 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| || ||||||||| || || || || ||| | || |||| ||||| || ||| Sbjct 87154 TGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTGGCTGACTGCTATGGCGATGAATTT 87095 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAGTCGATGCACG 97174 ||||| || || ||||| || ||||| || ||| ||| | | | | | Sbjct 87094 GAGGCTCTCTATACCAAGTACGAACAGGAGGGACGTGGCCGTCTGACCATT--AAGGCCC 87037 Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233 |||| |||||| | || ||| || ||||||| |||||||| | || | ||| || | Sbjct 87036 AGAAGCTGTGGTATGCTATCTTGGAGGCTCAGACTGAGACTGGTAACCCTTTCATGCTGT 86977 Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293 |||||||| | || ||||| || ||||| || |||| || || | |||| Sbjct 86976 ACAAGGATCACTGCAACCGCAAGAGTAACCAGAAGAACCTGGGAACTATTCGCAGTTCCA 86917 Query 97294 ATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGG 97353 | || ||||| || || | |||||| | |||| || ||| || || ||| |||| Sbjct 86916 ACCTTTGCACTGAGATCATCGAGTACTGCGCTCCCGATGAGGTTGCCGTGTGCAACCTGG 86857 Query 97354 CATC 97357 | || Sbjct 86856 CTTC 86853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741055818917400