Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06- 26] 365 sequences; 25,429,610 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq9 176 7e-40 seq19 100 4e-17 >seq9 Length=401650 Score = 176 bits (194), Expect = 7e-40 Identities = 202/269 (75%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 |||||||||||| ||| |||| |||||| || ||||| || || ||||||||||| |||| Sbjct 392189 CGCTAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACCAAGCCCGCTA 392247 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || ||||| |||||||||||||| ||||||||| | || | || |||| || |||| Sbjct 392248 TTCGCCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCCGCCATGATCTACGAGGAGA 392307 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| |||| | |||| |||||| || || || | ||| ||| || ||| || | Sbjct 392308 CCCGTGGTGTTCTCAAGACCTTCCTTGAGGGTGTCATTCGTGACGCTGTCACCTACACTG 392367 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| || || || ||||| ||||||| || | || | |||| Sbjct 392368 AGCACGCCAAGCGCAAGACCGTTACTTCGCTGGATGTCGTCTACGCTCTCAAGAGACAAG 392427 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | | || ||||| || ||||| Sbjct 392428 GCCGCACCCTGTACGGTTTCGGTGGTTAA 392456 >seq19 Length=274706 Score = 100 bits (110), Expect = 4e-17 Identities = 85/102 (83%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||||||||||| ||| |||||| || ||||| || || || |||||||| || | Sbjct 105928 CGCCAAGCGTCATCGCAAGAT-TCTTCGTGACAACATTCAGGGTATTACCAAGCCCGCCA 105870 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 | || ||||| |||||||||||||| ||||||||| | |||| Sbjct 105869 TTCGCCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCTG 105828 Score = 89.7 bits (98), Expect = 8e-14 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| ||||||| |||| |||| | |||| |||||| || || || | ||| | Sbjct 105757 TGATCTACGAAGAGACCCGTGGTGTTCTCAAGACCTTCCTTGAGGGTGTCATTCGTGACG 105698 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 || || ||| ||||||||||| || || |||||||||||||| | || |||| || | Sbjct 105697 CTGTCACCTACACCGAGCACGCCAAGCGCAAGACTGTCACCTCGCTTGACGTCGTTTACG 105638 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | || || || ||||| | | || ||||| || ||||| Sbjct 105637 CTCTCAAGCGCCAGGGCCGCACTCTGTACGGTTTCGGTGGTTAA 105594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074866277945