Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06-
26] 365 sequences; 25,429,610 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq9 176 7e-40
seq19 100 4e-17
>seq9
Length=401650
Score = 176 bits (194), Expect = 7e-40
Identities = 202/269 (75%), Gaps = 2/269 (1%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
|||||||||||| ||| |||| |||||| || ||||| || || ||||||||||| ||||
Sbjct 392189 CGCTAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACCAAGCCCGCTA 392247
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
| || ||||| |||||||||||||| ||||||||| | || | || |||| || ||||
Sbjct 392248 TTCGCCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCCGCCATGATCTACGAGGAGA 392307
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
|||| |||| | |||| |||||| || || || | ||| ||| || ||| || |
Sbjct 392308 CCCGTGGTGTTCTCAAGACCTTCCTTGAGGGTGTCATTCGTGACGCTGTCACCTACACTG 392367
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
||||||| || || ||||| || || || ||||| ||||||| || | || | ||||
Sbjct 392368 AGCACGCCAAGCGCAAGACCGTTACTTCGCTGGATGTCGTCTACGCTCTCAAGAGACAAG 392427
Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
|||| | | || ||||| || |||||
Sbjct 392428 GCCGCACCCTGTACGGTTTCGGTGGTTAA 392456
>seq19
Length=274706
Score = 100 bits (110), Expect = 4e-17
Identities = 85/102 (83%), Gaps = 2/102 (2%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| ||||||||||||| ||| |||||| || ||||| || || || |||||||| || |
Sbjct 105928 CGCCAAGCGTCATCGCAAGAT-TCTTCGTGACAACATTCAGGGTATTACCAAGCCCGCCA 105870
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
| || ||||| |||||||||||||| ||||||||| | ||||
Sbjct 105869 TTCGCCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCTG 105828
Score = 89.7 bits (98), Expect = 8e-14
Identities = 118/164 (72%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595
|| |||| ||||||| |||| |||| | |||| |||||| || || || | ||| |
Sbjct 105757 TGATCTACGAAGAGACCCGTGGTGTTCTCAAGACCTTCCTTGAGGGTGTCATTCGTGACG 105698
Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655
|| || ||| ||||||||||| || || |||||||||||||| | || |||| || |
Sbjct 105697 CTGTCACCTACACCGAGCACGCCAAGCGCAAGACTGTCACCTCGCTTGACGTCGTTTACG 105638
Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
| | || || || ||||| | | || ||||| || |||||
Sbjct 105637 CTCTCAAGCGCCAGGGCCGCACTCTGTACGGTTTCGGTGGTTAA 105594
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79074866277945
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |