Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06- 26] 365 sequences; 25,429,610 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq59 143 3e-29 seq24 125 7e-24 seq14 118 1e-21 seq38 105 6e-18 seq96 100 3e-16 >seq59 Length=151500 Score = 143 bits (158), Expect = 3e-29 Identities = 702/1106 (63%), Gaps = 21/1106 (2%) Strand=Plus/Plus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||| ||||| ||||| || ||||||||||| ||| || | ||| || ||| | || Sbjct 86280 TTGACAACCTGGAACTCACCAGCCAACACACGGCGCTGGTAAATGTTGGAAGTGTAAGGC 86339 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || ||||||| || ||||| || || | |||| || |||||||| |||| Sbjct 86340 TCGAAGCACTCGTTGTTACCCAGAATCTGGGACGTCGAGGCTGTGGGCATAGGGGCCAAA 86399 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | | || ||||| | ||||||| |||||| | ||||| | | ||| ||||| Sbjct 86400 AGAAGGGAGTTGCGAACACCGTGCTGCTTGATCTGGTCCTTCAAAGAGTTCCAGTCCCAC 86459 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297 || | | || | || |||||||||||| |||| | || |||| | | || Sbjct 86460 AGGTCACTGGGGGTAACATCCCACATGTCGAACTGAAGGATACCCTGAGAGACAGGAGAA 86519 Query 145298 CCTTGAAAGGAACTGTAACTGCC-CCAAGTTTTGGCGAGCTCGCAACTCGCCTCCAGAGC 145356 || | ||| ||| || |||| | || | ||||| |||||| || || Sbjct 86520 CCCTCGTAGGTCGAGTAGGGACCTTCAAG-AATAGCAATATCGCACGACGCCTCGAGGGC 86578 Query 145357 GCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGTA 145416 || ||||| ||||| || ||| |||||||| | || ||| | ||| | Sbjct 86579 AGCGTGGTAAATGGTCTCAAAGATCTGCTTGTTGAGCTGACGGGCCTCAGCAGACTCAAA 86638 Query 145417 CGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCCG 145476 |||||||| || | || ||||| || || ||||| | || || |||||||| || Sbjct 86639 AGGCATGCGAAGGGCCAGGAAGGCATCAGCCAGACCCTGAACACCAACACCGATGGGGCG 86698 Query 145477 ATGTTTCATGTTGCTCATCCTCGCCGACTCGATA---GGATATCGATTACGGTCGATAAT 145533 || ||||||||| | | || ||||||| || || | || || ||||| Sbjct 86699 GTGGCGCATGTTGCTGTTACGGGC---CTCGATAACGGGGTAGTGGTTCACATCAATAAT 86755 Query 145534 TTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACCG 145593 |||||||| || || || ||||| || | | ||| ||| | ||||| | | Sbjct 86756 GCGGTTCAAGTTGCGAACAACGACCTTGGTGACATCGTGCAGCTTCTGGAAGTCGTA-GG 86814 Query 145594 AG-CCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCG 145652 || | || | | ||| || | | || | || |||| || || || || Sbjct 86815 AGTTGTTGTTGTAGTCAACAAAGGCAGGAAGAGCAAGAGAAGCCAGGTTGCACACGGCAA 86874 Query 145653 TCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTC 145712 ||| |||| ||| ||| | | |||||| | ||| | ||| || || |||| Sbjct 86875 CCTCATCGGGAGCGCAGTACTCGATGATCTCAGTGCAAAGGTTGGAACTGCGAATAGTTC 86934 Query 145713 CCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGC 145772 |||| || | ||| ||||| || | |||||| |||||||| |||||| | || | Sbjct 86935 CCAGGTTCTTCTGGTTACTCTTGCGGTTGCAGTGATCCTTGTACAGCATGAAAGGGTTAC 86994 Query 145773 CAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAGTCCTGCGCACGCACCTGCTGCT 145832 ||||||| ||| | ||||| |||| | || | ||| || | | | Sbjct 86995 CAGTCTCAGTCTGAGCCTCCAAGATAGCATACCACAGCTTCTGGGCCTTAATGGTCAGAC 87054 Query 145833 GGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAAT 145892 || || ||||| | |||||| || | ||||| ||||||| | || ||||| | Sbjct 87055 GGCCACGTCCCTCCTGTTCGTACTTGGTATAGAGAGCCTCAAATTCATCGCCATAGCAGT 87114 Query 145893 CGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTGACGC 145952 | | |||||| || |||| |||||| ||||| || | ||| |||||| | || | Sbjct 87115 CAGCCAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTTGCCGTTCTTCTCAACAC 87174 Query 145953 GCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTTGCAATCCT 146012 ||| ||| |||||||| || | ||||| || | ||| ||||| || |||| Sbjct 87175 GCTTCATGAACAAATCAGGAATCCACAAGGCAAGGAACAAATCGCGAGCACGAATCTCCT 87234 Query 146013 CAGCACCCATGTTTCGCTTC---AAATTAAGCACACT-ATAGATGTCCGCGTGCCACGGT 146068 | ||| ||| |||| | || ||| | ||| | | || ||||||||||| Sbjct 87235 CCTTACCGTGGTT---CTTCCGGAGATCAAGGA-ACTCGAACACATCAGCGTGCCACGGC 87290 Query 146069 TCAATATAGACGGCGAGGGCTCCTTTTCGTTTG---CCACCCTGGTCCACGTGACGTACC 146125 || | || | ||| | || || || ||| |||||||| || |||| ||| | Sbjct 87291 TCCAGGTAAATGGCAAAAGCACCGGGACGCTTGTTACCACCCTGATCGACGTAACGAGCA 87350 Query 146126 ATGTTGTTAAAGACGCGCACCATGGG 146151 | ||||| ||||| |||| |||||| Sbjct 87351 GTATTGTTGAAGACACGCAACATGGG 87376 >seq24 Length=264051 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | || |||||||| || ||||||||||| Sbjct 250340 CCACCACGGAGACGGAGAACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGAG 250281 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| ||||||||||| ||| | || ||||||||||||||||| ||| Sbjct 250280 AGAGTACGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCCGGGGGG 250221 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | ||||| | ||||||| Sbjct 250220 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTATCTGACGACTCGACC 250161 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||| || || || || || || ||||| |||||||| Sbjct 250160 TCAAGGGTAATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 250114 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | || |||||||| ||||||||||| ||| Sbjct 250112 CCACCACGGAGACGAAGGACAAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAG 250053 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| ||| | || | |||||||||||||||||| Sbjct 250052 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCCGGAGGA 249993 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | || | || || | |||||| | Sbjct 249992 ATACCCTCCTTGTCCTGGATCTTGGACTTCACGTTGTCAATGGTGTCAGAGGACTCAACC 249933 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || || || |||||||| Sbjct 249932 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 249886 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| || || | || | || |||||||| || |||||||| || Sbjct 250569 GCCACCACGAAGACGGAGAACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 250510 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||| || |||||| |||||||| || || |||| | |||||||||||| || || Sbjct 250509 CAGGGTACGGCCGTCCTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGGGG 250450 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| || ||| | | || | ||||| | ||||||| Sbjct 250449 GATACCCTCCTTGTCCTGGATCTTGCTCTTCACGTTGTCAATGGTATCAGAAGACTCGAC 250390 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || ||||| || ||||| |||||||| Sbjct 250389 TTCAAGAGTGATGGTCTTTCCAGTGAGAGTCTTCACGAAGATCTGCAT 250342 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | || | ||| |||||||| ||||||||||| ||| Sbjct 249884 CCACCACGAAGGCGGAGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAG 249825 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| || ||| | || | |||||||||||||| || Sbjct 249824 AGGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAAATAAGGCGCTGCTGGTCCGGGGGA 249765 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||| | || | ||| |||| |||||||| Sbjct 249764 ATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAGGACTCGACC 249705 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 |||| ||| | ||| || ||||| Sbjct 249704 TCGAGGGTGATGGTCTTGCCGGT 249682 >seq14 Length=289536 Score = 118 bits (130), Expect = 1e-21 Identities = 162/225 (72%), Gaps = 1/225 (0%) Strand=Plus/Minus Query 131003 ATGAG-CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAA 131061 ||||| ||||| || | ||| || || | || | || |||||||| || |||||||| Sbjct 256441 ATGAGACCACCACGGAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAG 256382 Query 131062 TCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCC 131121 || || |||||| ||||| ||||||||||| ||| |||| | |||||||||||| Sbjct 256381 TCCGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCC 256322 Query 131122 GGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGAC 131181 ||||| || || || ||||| ||| || ||||| | || | || || | |||| Sbjct 256321 GGAGGAATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGAC 256262 Query 131182 TCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAA 131226 |||| || | ||| | ||| ||||| || || || || |||||| Sbjct 256261 TCGACCTCCAGGGTGATGGTCTTACCCGTCAGGGTCTTGACGAAA 256217 >seq38 Length=199572 Score = 105 bits (116), Expect = 6e-18 Identities = 332/501 (66%), Gaps = 25/501 (5%) Strand=Plus/Plus Query 46106 CCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGTATGGTGG 46165 |||||||||| |||||||||| | | || |||| || ||| ||||| |||| | Sbjct 76519 CCGACTGGGCCCTGAAGTGGATTACCGACAAGGAGTCGACCTTTGCCCAGCGTCTGGTTG 76578 Query 46166 CCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTTTACAT-C 46224 ||||||| || ||||| |||| || ||||| |||||| | ||||||| | | Sbjct 76579 CCTTTGCTGCCGTTGAGGGTATCTTCTTCTCTGGTGCCTTTGCCTCTATCTTTTGGCTGC 76638 Query 46225 AAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGCGACGAG 46284 || | || || |||||||| |||| || ||||||||||| || || || ||| Sbjct 76639 GCAAGCGTGGT-ATGATGCCCGGTTTGACCTTCTCAAACGAGCTGATCTCCCGTGATGAG 76697 Query 46285 GGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCGCGTGCACGACAAGCTTGCG 46344 || || || || |||||||| || || || | | ||| | || || || || Sbjct 76698 GGTCTTCACACCGACTTTGCCTG--CCTTCT-TTTCTCTCACTTGAACAAC-------CG 76747 Query 46345 CCCGA-CA--CCG----TGCTGAGCATGTTCAAGGAGGCGGTGGCCATTGAGAAGGAGTT 46397 ||| | || | | | | | ||| ||| || || || | || ||||||||||| Sbjct 76748 CCCTAGCAAGCAGTTGATCCAGGACATTATCACTGATGCCGTTGTTATCGAGAAGGAGTT 76807 Query 46398 TTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCACAGTCAATGTGCGAC-T 46456 |||| | || || ||| || || || || |||||||| | ||| ||| | Sbjct 76808 CCTTACTGAGGCTCTTCCCTGCGCTCTTCTTGGTATGAACGCTGACCTCATG-AAGACTT 76866 Query 46457 ACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCT-TCACCAGC-CGAAGCATTTTCA 46514 |||||||||| || || ||||| || || ||| ||| || || | ||| | | Sbjct 76867 ACATCGAGTTCGTCGCCGACCGTCTTCTGGTG--GCTCTCGGCAACGACAAGGTGTACAA 76924 Query 46515 CGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAACTAATTTTTT 46574 || || || || || |||||| | ||||||||||| | ||||| || || || || Sbjct 76925 GGCTTCTAACCCCTTCGACTTTATGGAAAACATCTCCCTCGGTGGCAAGACCAACTTCTT 76984 Query 46575 CGAAAAGCGCGTCGGCGAGTA 46595 ||| ||||| ||||| || || Sbjct 76985 CGAGAAGCGTGTCGGTGACTA 77005 >seq96 Length=85826 Score = 100 bits (110), Expect = 3e-16 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 131040 CGACT--CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 ||||| |||| || |||||||| || | |||||| ||||| ||||||||||| Sbjct 59297 CGACTAACCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCA 59356 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| |||| | |||||||||||||| || || || || ||||| ||| || |||| Sbjct 59357 GCGAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTG 59416 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | || || | ||||||| || | ||| | || ||||| || || || Sbjct 59417 ACGTTGTCGATCGTGTCCGAAGACTCGACCTCAAGGGTGATCGTCTTACCCGTAAGGGTC 59476 Query 131218 TTTACGAAAATCTGCAT 131234 || |||||||||||||| Sbjct 59477 TTAACGAAAATCTGCAT 59493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472010646441600