Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06- 26] 365 sequences; 25,429,610 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq24 96.9 3e-15 seq14 84.2 2e-11 >seq24 Length=264051 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || |||||||| || ||||||||||||| | ||| | | ||||| | || Sbjct 250088 TGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGC 250029 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| || |||| || ||||| |||||| ||| | ||||| ||||| || | Sbjct 250028 TTGCCAGCGAAAATCAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTG 249969 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | | ||||| || ||| || | ||||||||| || || ||| Sbjct 249968 GACTTCACGTTGTCAATGGTGTCAGAGGACTCAACCTCAAGGGTGATGGTCTTGCCAGTC 249909 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || |||||||| |||||||| Sbjct 249908 AGGGTCTTGACAAAGATCTGCAT 249886 Score = 95.1 bits (104), Expect = 1e-14 Identities = 165/237 (70%), Gaps = 5/237 (2%) Strand=Plus/Minus Query 16703 ATTTAC---CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTG 16759 |||||| || || || || | || |||| || || ||||||||||| || |||||| Sbjct 250577 ATTTACTGGCCACCACGAAGACGGAGAACCAGGTGGAGAGTGGACTCCTTCTGGATGTTG 250518 Query 16760 TAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGG 16819 ||||| | || ||| | ||||||||| || || || ||| | ||||| ||||| ||| Sbjct 250517 TAGTCAGACAGGGTACGGCCGTCCTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGG 250458 Query 16820 TCCACAGGCACGCCCTCTTTGT-CGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCC 16878 || || | ||||| |||| | | | ||||| |||||| | | | | || || Sbjct 250457 TCGGGGGGGATACCCTCCTTGTCCTGGATCTTGCT-CTTCACGTTGTCAATGGTATCAGA 250399 Query 16879 GGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | ||| ||| | |||||||| ||||| || || || || || || |||||||| Sbjct 250398 AGACTCGACTTCAAGAGTGATGGTCTTTCCAGTGAGAGTCTTCACGAAGATCTGCAT 250342 >seq14 Length=289536 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| || ||||||||||| | || ||| | | ||| Sbjct 256420 AGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCC 256361 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || ||||| || | || || ||||| |||||| ||| | ||||| ||||| Sbjct 256360 TCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGAGGAATACCCTCCTTGTCC 256301 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || | ||| || | | | | ||||| || ||| |||| ||||||||| Sbjct 256300 TGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCCAGGGTGATGGTC 256241 Query 16904 TTTCCGGTCAGCGTTTTGACAAAA 16927 || || ||||| || ||||| ||| Sbjct 256240 TTACCCGTCAGGGTCTTGACGAAA 256217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405086197991350