Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06-
26] 365 sequences; 25,429,610 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq24 116 3e-21
seq96 107 2e-18
seq14 98.7 8e-16
seq59 95.1 1e-14
>seq24
Length=264051
Score = 116 bits (128), Expect = 3e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || ||||| || || | || || || || |||| ||||| || || || |
Sbjct 249886 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGTCCTCT 249945
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| | | || || || || ||||||||||||||||| || || ||
Sbjct 249946 GACACCATTGACAACGTGAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAG 250005
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||||| || || || ||||| ||| | |||||| ||||||| ||||||| ||||||
Sbjct 250006 CAGCGTCTGATTTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAAC 250065
Query 22399 ATTCAAAAAGAATCCAC 22415
||||| || || || ||
Sbjct 250066 ATTCAGAAGGAGTCTAC 250082
Score = 113 bits (124), Expect = 4e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || ||| | || || || || ||||||||||||| || | |
Sbjct 250342 ATGCAGATCTTCGTGAAGACTCTCACTGGAAAGACCATCACTCTTGAAGTCGAGTCTTCT 250401
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | ||| | | || || || || |||||||||||||| || ||||| ||
Sbjct 250402 GATACCATTGACAACGTGAAGAGCAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAG 250461
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| |||||||| ||||| || || ||| | ||||| ||| ||| | || || ||||||
Sbjct 250462 CAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAGGACGGCCGTACCCTGTCTGACTACAAC 250521
Query 22399 ATTCAAAAAGAATCCAC 22415
|| || || || |||||
Sbjct 250522 ATCCAGAAGGAGTCCAC 250538
Score = 111 bits (122), Expect = 1e-19
Identities = 129/174 (74%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
||||| || || |||| || || || || || |||| || | ||| | ||||
Sbjct 249682 ACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCCGACACTATTGACAACGTCAAGTCC 249741
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| ||||| ||||||||||||||||| || || || || || ||||| || || || ||
Sbjct 249742 AAGATTCAGGACAAGGAGGGTATTCCCCCGGACCAGCAGCGCCTTATTTTCGCTGGAAAG 249801
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416
||| | |||||| |||||| ||||||| ||||||||||| || || ||||||
Sbjct 249802 CAGCTTGAGGATGGTCGCACCCTCTCCGACTACAACATTCAGAAGGAGTCCACC 249855
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | || || || || | || ||||| || || | |
Sbjct 250114 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATTACCCTTGAGGTCGAGTCGTCA 250173
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | ||| || |||| || || || |||||||||||||| || || || ||
Sbjct 250174 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 250233
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||| | || || |||||||| ||| | |||||| ||| || |||| |||||||||
Sbjct 250234 CAGCGTTTGATTTTCGCCGGCAAGCAGCTTGAGGATGGCCGTACTCTCTCGGATTACAAC 250293
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| || || || ||||| | || || ||| | || | || || |||
Sbjct 250294 ATCCAGAAGGAGTCCACTCTTCACTTGGTTCTCCGTCTCCGTGGTGGT 250341
>seq96
Length=85826
Score = 107 bits (118), Expect = 2e-18
Identities = 140/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272
|| |||||||| ||||| ||||| || | || ||||| ||| |||| ||||| || ||
Sbjct 59499 GTCAAGATGCAGATTTTCGTTAAGACCCTTACGGGTAAGACGATCACCCTTGAGGTCGAG 59440
Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332
| | || || | ||| | |||| || || || ||||||||||| ||||| ||
Sbjct 59439 TCTTCGGACACGATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCG 59380
Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392
|| || || || || || || || ||||| ||| | |||||| ||||||| | || ||
Sbjct 59379 GACCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCTGAC 59320
Query 22393 TACAACATTCAAAA 22406
|||||||| || ||
Sbjct 59319 TACAACATCCAGAA 59306
>seq14
Length=289536
Score = 98.7 bits (108), Expect = 8e-16
Identities = 135/189 (71%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286
||| || || || | || ||||| || |||| || || || || || | || ||| |
Sbjct 256217 TTTCGTCAAGACCCTGACGGGTAAGACCATCACCCTGGAGGTCGAGTCCTCGGACACCAT 256276
Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346
||| | |||| || || || ||||||||||||||||| || || || || || ||
Sbjct 256277 CGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAGCAGCGCCT 256336
Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406
|| || || ||||| ||| | |||||| ||||||| | || || |||||||| || ||
Sbjct 256337 GATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCGGACTACAACATCCAGAA 256396
Query 22407 AGAATCCAC 22415
|| |||||
Sbjct 256397 GGAGTCCAC 256405
>seq59
Length=151500
Score = 95.1 bits (104), Expect = 1e-14
Identities = 254/383 (66%), Gaps = 9/383 (2%)
Strand=Plus/Plus
Query 130015 TCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTT 130074
|| || || ||||| |||||||| || | ||||| ||| |||||||| || ||
Sbjct 87168 TCAACACGCTTCATGAACAAATCAGGAATCCACAAGGCAAGGAACAAATCGCGAGCACGA 87227
Query 130075 CTATCCTCGGCACCCATGTTACGTTTC--AGTTCAAGGAAATCGTAAATGTCGGCGTGCC 130132
| ||||| ||| ||| || | || |||||||| ||| | | || |||||||
Sbjct 87228 ATCTCCTCCTTACCGTGGTTC--TTCCGGAGATCAAGGAACTCGAACACATCAGCGTGCC 87285
Query 130133 ACGGTTCAACATAAATTGCCATTGCGCCCTTCCGTTTG---CCCCCTTGGTCAACGTGGC 130189
|||| || | ||||| || | || || || ||| || || || || |||| |
Sbjct 87286 ACGGCTCCAGGTAAATGGCAAAAGCACCGGGACGCTTGTTACCACCCTGATCGACGTAAC 87345
Query 130190 GCACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGC 130249
| | | ||||||| |||| |||||||| | | | ||||| | || ||||| ||||
Sbjct 87346 GAGCAGTATTGTTGAAGACACGCAACATGGGAACAATACCGTTCGAGGTACCGTTGGTGC 87405
Query 130250 TCTCAATGAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAA 130309
||||| || ||| ||| || | || ||| | ||||| ||||| || | |
Sbjct 87406 CAGCAATGTAAGAACCAGTAGCACGGATACGGTGTACGTTGAGACCAATGCCACCCGCCA 87465
Query 130310 ATTTTGATATCAACGCGCAA-TCGCGTAGCGTTTCATAAATGCCAACGATACTGTCTTCT 130368
|| || |||| |||||| || | || || ||||| || || |||||||||| ||
Sbjct 87466 TCTTGGAGATCATAGCGCAAGTCTTG-AGGGTGTCATAGATACCTTCGATACTGTCCTCC 87524
Query 130369 TTAATGTTTAGGAGGAAACACGA 130391
|| |||| || | ||| || ||
Sbjct 87525 TTCATGTCTACCAAGAAGCAAGA 87547
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419726132866225
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |