Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06- 26] 365 sequences; 25,429,610 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq24 116 3e-21 seq96 107 2e-18 seq14 98.7 8e-16 seq59 95.1 1e-14 >seq24 Length=264051 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || |||| ||||| || || || | Sbjct 249886 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGTCCTCT 249945 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | | || || || || ||||||||||||||||| || || || Sbjct 249946 GACACCATTGACAACGTGAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAG 250005 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||| ||| | |||||| ||||||| ||||||| |||||| Sbjct 250006 CAGCGTCTGATTTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAAC 250065 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || || || Sbjct 250066 ATTCAGAAGGAGTCTAC 250082 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | || || || || ||||||||||||| || | | Sbjct 250342 ATGCAGATCTTCGTGAAGACTCTCACTGGAAAGACCATCACTCTTGAAGTCGAGTCTTCT 250401 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | | || || || || |||||||||||||| || ||||| || Sbjct 250402 GATACCATTGACAACGTGAAGAGCAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAG 250461 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| ||||| || || ||| | ||||| ||| ||| | || || |||||| Sbjct 250462 CAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAGGACGGCCGTACCCTGTCTGACTACAAC 250521 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 250522 ATCCAGAAGGAGTCCAC 250538 Score = 111 bits (122), Expect = 1e-19 Identities = 129/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||| || || || || || |||| || | ||| | |||| Sbjct 249682 ACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCCGACACTATTGACAACGTCAAGTCC 249741 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||||||||||||||| || || || || || ||||| || || || || Sbjct 249742 AAGATTCAGGACAAGGAGGGTATTCCCCCGGACCAGCAGCGCCTTATTTTCGCTGGAAAG 249801 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 ||| | |||||| |||||| ||||||| ||||||||||| || || |||||| Sbjct 249802 CAGCTTGAGGATGGTCGCACCCTCTCCGACTACAACATTCAGAAGGAGTCCACC 249855 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || | || ||||| || || | | Sbjct 250114 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATTACCCTTGAGGTCGAGTCGTCA 250173 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || |||| || || || |||||||||||||| || || || || Sbjct 250174 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 250233 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || |||||||| ||| | |||||| ||| || |||| ||||||||| Sbjct 250234 CAGCGTTTGATTTTCGCCGGCAAGCAGCTTGAGGATGGCCGTACTCTCTCGGATTACAAC 250293 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || ||||| | || || ||| | || | || || ||| Sbjct 250294 ATCCAGAAGGAGTCCACTCTTCACTTGGTTCTCCGTCTCCGTGGTGGT 250341 >seq96 Length=85826 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || |||||||| ||||| ||||| || | || ||||| ||| |||| ||||| || || Sbjct 59499 GTCAAGATGCAGATTTTCGTTAAGACCCTTACGGGTAAGACGATCACCCTTGAGGTCGAG 59440 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 | | || || | ||| | |||| || || || ||||||||||| ||||| || Sbjct 59439 TCTTCGGACACGATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCG 59380 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || || || || || || ||||| ||| | |||||| ||||||| | || || Sbjct 59379 GACCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCTGAC 59320 Query 22393 TACAACATTCAAAA 22406 |||||||| || || Sbjct 59319 TACAACATCCAGAA 59306 >seq14 Length=289536 Score = 98.7 bits (108), Expect = 8e-16 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286 ||| || || || | || ||||| || |||| || || || || || | || ||| | Sbjct 256217 TTTCGTCAAGACCCTGACGGGTAAGACCATCACCCTGGAGGTCGAGTCCTCGGACACCAT 256276 Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346 ||| | |||| || || || ||||||||||||||||| || || || || || || Sbjct 256277 CGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAGCAGCGCCT 256336 Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || || || ||||| ||| | |||||| ||||||| | || || |||||||| || || Sbjct 256337 GATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCGGACTACAACATCCAGAA 256396 Query 22407 AGAATCCAC 22415 || ||||| Sbjct 256397 GGAGTCCAC 256405 >seq59 Length=151500 Score = 95.1 bits (104), Expect = 1e-14 Identities = 254/383 (66%), Gaps = 9/383 (2%) Strand=Plus/Plus Query 130015 TCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTT 130074 || || || ||||| |||||||| || | ||||| ||| |||||||| || || Sbjct 87168 TCAACACGCTTCATGAACAAATCAGGAATCCACAAGGCAAGGAACAAATCGCGAGCACGA 87227 Query 130075 CTATCCTCGGCACCCATGTTACGTTTC--AGTTCAAGGAAATCGTAAATGTCGGCGTGCC 130132 | ||||| ||| ||| || | || |||||||| ||| | | || ||||||| Sbjct 87228 ATCTCCTCCTTACCGTGGTTC--TTCCGGAGATCAAGGAACTCGAACACATCAGCGTGCC 87285 Query 130133 ACGGTTCAACATAAATTGCCATTGCGCCCTTCCGTTTG---CCCCCTTGGTCAACGTGGC 130189 |||| || | ||||| || | || || || ||| || || || || |||| | Sbjct 87286 ACGGCTCCAGGTAAATGGCAAAAGCACCGGGACGCTTGTTACCACCCTGATCGACGTAAC 87345 Query 130190 GCACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGC 130249 | | | ||||||| |||| |||||||| | | | ||||| | || ||||| |||| Sbjct 87346 GAGCAGTATTGTTGAAGACACGCAACATGGGAACAATACCGTTCGAGGTACCGTTGGTGC 87405 Query 130250 TCTCAATGAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAA 130309 ||||| || ||| ||| || | || ||| | ||||| ||||| || | | Sbjct 87406 CAGCAATGTAAGAACCAGTAGCACGGATACGGTGTACGTTGAGACCAATGCCACCCGCCA 87465 Query 130310 ATTTTGATATCAACGCGCAA-TCGCGTAGCGTTTCATAAATGCCAACGATACTGTCTTCT 130368 || || |||| |||||| || | || || ||||| || || |||||||||| || Sbjct 87466 TCTTGGAGATCATAGCGCAAGTCTTG-AGGGTGTCATAGATACCTTCGATACTGTCCTCC 87524 Query 130369 TTAATGTTTAGGAGGAAACACGA 130391 || |||| || | ||| || || Sbjct 87525 TTCATGTCTACCAAGAAGCAAGA 87547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419726132866225