Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06-
26] 365 sequences; 25,429,610 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq59 134 3e-26
seq44 120 6e-22
seq9 107 4e-18
>seq59
Length=151500
Score = 134 bits (148), Expect = 3e-26
Identities = 418/641 (65%), Gaps = 7/641 (1%)
Strand=Plus/Plus
Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGA 293174
||| | |||||| | ||||||||||||||| || || | | || || || | |||
Sbjct 86075 CTGAGACTGATCAATAAAGGCACCACGATCGGCCGCCATTTGAACAACAGTGCGCTGAGA 86134
Query 293175 GATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTG 293234
|||||||| |||||||||| | ||||| |||| | |||||| | |||||
Sbjct 86135 AATCTCCCAAACCGTCTTGTACAGAGACTTGATGTCAGCAGGAATGCTGGGGATGTTCTG 86194
Query 293235 GATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCAAGTCCCACGAGC 293294
|||||| || || || ||| || |||||||||| | |||||||| ||| | |
Sbjct 86195 GATAGAACCGTTGTCGGAAATGATACGGTTCTTCATGTTGTCGGACCACAGACCAAGGTC 86254
Query 293295 AATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGACG 293354
|| || || || | | | | ||||||||| ||||||||||||| | || ||
Sbjct 86255 AACCAGGTCACGAAGCAACCACGGGTTGACAACCTGGAACTCACCAGCCAACACACGGCG 86314
Query 293355 GCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCGCAAATCTGAGCAGT 293414
||||||||| |||||| || ||| ||| || |||||| | ||
Sbjct 86315 CTGGTAAATGTTGGAAGTGTAAGGCTCGAAGCACTCGTTGTTACCCAGAATCTGGGACGT 86374
Query 293415 AGATGCGGTAGGCATAAGAGCAGTCGTCAGAGAGTTCCTCACACC---CTTCTTGA-CAC 293470
|| || || |||||| | || || ||||| | ||||| || ||||| |
Sbjct 86375 CGAGGCTGTGGGCATAGGGGCCAAAAGAAGGGAGTTGCGAACACCGTGCTGCTTGATCTG 86434
Query 293471 GCGATTCGAGACCCGCCCAGT-CCAGAGCAGTCTGAGGTGTAACACCCCAGAGATGATAC 293529
| ||| | | ||||| ||| || ||| || |||||| |||| | | ||
Sbjct 86435 GTCCTTC-AAAGAGTTCCAGTCCCACAGGTCACTG-GGGGTAACATCCCACATGTCGAAC 86492
Query 293530 TGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCATCA 293589
|| | |||||||| | ||||||| ||||| |||| | | ||| || | | |
Sbjct 86493 TGAAGGATACCCTGAGAGACAGGAGAACCCTCGTAGGTCGAGTAGGGACCTTCAAGAATA 86552
Query 293590 GAGAGCTCGCAAGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGGTTG 293649
| | ||||| || ||||| | ||||| ||||||| ||| ||||||| ||||
Sbjct 86553 GCAATATCGCACGACGCCTCGAGGGCAGCGTGGTAAATGGTCTCAAAGATCTGCTTGTTG 86612
Query 293650 AGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACATCCTGCAGA 293709
|||| || |||| |||| ||||| ||||| || | ||| |||| ||||
Sbjct 86613 AGCTGACGGGCCTCAGCAGACTCAAAAGGCATGCGAAGGGCCAGGAAGGCATCAGCCAGA 86672
Query 293710 CCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCT 293750
||||| ||||| ||||| | |||||| | ||| |||||||
Sbjct 86673 CCCTGAACACCAACACCGATGGGGCGGTGGCGCATGTTGCT 86713
>seq44
Length=184135
Score = 120 bits (132), Expect = 6e-22
Identities = 442/683 (65%), Gaps = 31/683 (5%)
Strand=Plus/Minus
Query 279692 GCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCT 279751
||| || ||||| ||||| |||||||||||||||||||| ||||| |||||||||| |
Sbjct 83925 GCCTGTTGGTTCGCTGTCCGGTGGTTGGAAGATGAAGCTTGCCCTGGCTCGCGCCATGTT 83866
Query 279752 ACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGT 279811
| | || || ||||| |||| || || || || |||||| |||| |||| ||
Sbjct 83865 GCAGAAGGCTGACGTCCTGTTGCTGGACGAACCTACTAACCACTTGGATGTTGCCAATGT 83806
Query 279812 AGCCTGGCTAGTGTCCTACCTAA----CCAGTCTGAAGAATGTTTCTTCCCTCATTGTCT 279867
||||| | | |||||| | ||| | || || || | || |||||||| |
Sbjct 83805 CAAGTGGCTCGAGAACTACCTCAAGACCCACACCGA-GA---TTACCTCGCTCATTGTTT 83750
Query 279868 CTCACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCC---ATCATTCACTATGAGCAAA 279924
||||||||||||| ||||| || | || | || || ||| ||||| || |
Sbjct 83749 CTCACGACTCTGGTTTCCTTGACGAGGT---CACTACCGATATCTACCACTACGAAGCCA 83693
Query 279925 ATCTGAAGCTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGG 279984
| |||||| | | || |||||||||| ||||||| || | |||||||||||
Sbjct 83692 ACAAGAAGCTGGCTTTGTACCACGGCAACCTGGCTGCTTTTGTTAAGATGCGCCCTGAGG 83633
Query 279985 CGGCCGCCTACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGT 280044
| | ||||| |||| | | | | ||| | ||||| || ||
Sbjct 83632 CCAAATCTTACTACACCCTGTCAGCTTCGCTTGTCCAGTTCAAGTTCCCCCCTCCTGGTA 83573
Query 280045 TTCTGGAGGGCATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCG---TCTCCT 280101
|||| || ||| || || ||| || ||||| | | || || || ||
Sbjct 83572 TTCTTACTGGTGTCAAGTCCAACACTCGTGCCATCAT----CCGCATGACGGACGCTACT 83517
Query 280102 TTGC-TTATCCCAATGGCCCCAA--CATCT-TCAGCAGTGTCAACTCGCAGGTTTCTATG 280157
| | || ||||| | |||||| | ||| | |||| || | || | || ||
Sbjct 83516 TACCAGTACCCCAAGGCCCCCAAGCCCTCTCTGAGCAACGTTTCTTGCCAACTGACTTTG 83457
Query 280158 AACTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTC 280217
||||| ||| | || || ||||| ||||| |||||||| || || ||||| |
Sbjct 83456 TCTTCACGTGTTGCCATTATCGGCCCCAACGGTGCTGGTAAGTCAACTCTCATCAAGATG 83397
Query 280218 CTGACTGGCGAG---ACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGG 280274
||||||| ||| | || | | | |||| ||| |||||| |||||| ||||
Sbjct 83396 TTGACTGGTGAGGTTATCC---CTAGTCAGGGAAGAGTTGAGAAGCACCCCAACCTGCGT 83340
Query 280275 ATGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCT 280334
|| | |||| || ||||||||| | | ||| | |||| ||| |||| | ||| ||
Sbjct 83339 ATCGGTTACATCAAGCAGCACGCTCTTGAGCACGTTGAGATGCACTTGGAGAAGACCCCC 83280
Query 280335 AACCAATACATTCAGTGGCGCTA 280357
||||| || | |||||||| ||
Sbjct 83279 AACCAGTATCTCCAGTGGCGTTA 83257
>seq9
Length=401650
Score = 107 bits (118), Expect = 4e-18
Identities = 171/243 (70%), Gaps = 2/243 (1%)
Strand=Plus/Plus
Query 279324 GCAGAGAAGGAGACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATAT 279383
|| ||| |||| |||| |||||||| ||||| |||| |||||||||||| ||
Sbjct 328149 GCTGAGGAGGACGATGAGGAGGGTGAGGACCTGTGCAACTGCACTTTCTCGCTCGCCTAC 328208
Query 279384 GGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGT 279443
|||| |||||||| || ||| |||| ||| | |||||||| | || || |||
Sbjct 328209 GGTGCCAAGATTCTTCTCAACCAGACCCACCTTCGTCTTAAGCGTGGTCAGCGCTACGGT 328268
Query 279444 CTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAG 279503
|| ||||||||| || | || ||| ||| || ||||| ||||| |||| |||
Sbjct 328269 CTTTGCGGTCCCAACGGTTCCGGCAAGTCCACCCTCATGCGTGCCATCAACAACGAGCAG 328328
Query 279504 CTGGAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGA 279562
| | ||| ||||| | ||| || ||||| | ||| || | || ||||||||| | ||
Sbjct 328329 GTTG-AGGGTTTCCCCAAGCAGTCCGAGGTCAAGACTGTCTTCGTCGAGCACGACCTTGA 328387
Query 279563 CTC 279565
|||
Sbjct 328388 CTC 328390
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027831993256965
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |