Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06- 26] 365 sequences; 25,429,610 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq59 134 3e-26 seq44 120 6e-22 seq9 107 4e-18 >seq59 Length=151500 Score = 134 bits (148), Expect = 3e-26 Identities = 418/641 (65%), Gaps = 7/641 (1%) Strand=Plus/Plus Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGA 293174 ||| | |||||| | ||||||||||||||| || || | | || || || | ||| Sbjct 86075 CTGAGACTGATCAATAAAGGCACCACGATCGGCCGCCATTTGAACAACAGTGCGCTGAGA 86134 Query 293175 GATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTG 293234 |||||||| |||||||||| | ||||| |||| | |||||| | ||||| Sbjct 86135 AATCTCCCAAACCGTCTTGTACAGAGACTTGATGTCAGCAGGAATGCTGGGGATGTTCTG 86194 Query 293235 GATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCAAGTCCCACGAGC 293294 |||||| || || || ||| || |||||||||| | |||||||| ||| | | Sbjct 86195 GATAGAACCGTTGTCGGAAATGATACGGTTCTTCATGTTGTCGGACCACAGACCAAGGTC 86254 Query 293295 AATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGACG 293354 || || || || | | | | ||||||||| ||||||||||||| | || || Sbjct 86255 AACCAGGTCACGAAGCAACCACGGGTTGACAACCTGGAACTCACCAGCCAACACACGGCG 86314 Query 293355 GCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCGCAAATCTGAGCAGT 293414 ||||||||| |||||| || ||| ||| || |||||| | || Sbjct 86315 CTGGTAAATGTTGGAAGTGTAAGGCTCGAAGCACTCGTTGTTACCCAGAATCTGGGACGT 86374 Query 293415 AGATGCGGTAGGCATAAGAGCAGTCGTCAGAGAGTTCCTCACACC---CTTCTTGA-CAC 293470 || || || |||||| | || || ||||| | ||||| || ||||| | Sbjct 86375 CGAGGCTGTGGGCATAGGGGCCAAAAGAAGGGAGTTGCGAACACCGTGCTGCTTGATCTG 86434 Query 293471 GCGATTCGAGACCCGCCCAGT-CCAGAGCAGTCTGAGGTGTAACACCCCAGAGATGATAC 293529 | ||| | | ||||| ||| || ||| || |||||| |||| | | || Sbjct 86435 GTCCTTC-AAAGAGTTCCAGTCCCACAGGTCACTG-GGGGTAACATCCCACATGTCGAAC 86492 Query 293530 TGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCATCA 293589 || | |||||||| | ||||||| ||||| |||| | | ||| || | | | Sbjct 86493 TGAAGGATACCCTGAGAGACAGGAGAACCCTCGTAGGTCGAGTAGGGACCTTCAAGAATA 86552 Query 293590 GAGAGCTCGCAAGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGGTTG 293649 | | ||||| || ||||| | ||||| ||||||| ||| ||||||| |||| Sbjct 86553 GCAATATCGCACGACGCCTCGAGGGCAGCGTGGTAAATGGTCTCAAAGATCTGCTTGTTG 86612 Query 293650 AGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACATCCTGCAGA 293709 |||| || |||| |||| ||||| ||||| || | ||| |||| |||| Sbjct 86613 AGCTGACGGGCCTCAGCAGACTCAAAAGGCATGCGAAGGGCCAGGAAGGCATCAGCCAGA 86672 Query 293710 CCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCT 293750 ||||| ||||| ||||| | |||||| | ||| ||||||| Sbjct 86673 CCCTGAACACCAACACCGATGGGGCGGTGGCGCATGTTGCT 86713 >seq44 Length=184135 Score = 120 bits (132), Expect = 6e-22 Identities = 442/683 (65%), Gaps = 31/683 (5%) Strand=Plus/Minus Query 279692 GCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCT 279751 ||| || ||||| ||||| |||||||||||||||||||| ||||| |||||||||| | Sbjct 83925 GCCTGTTGGTTCGCTGTCCGGTGGTTGGAAGATGAAGCTTGCCCTGGCTCGCGCCATGTT 83866 Query 279752 ACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGT 279811 | | || || ||||| |||| || || || || |||||| |||| |||| || Sbjct 83865 GCAGAAGGCTGACGTCCTGTTGCTGGACGAACCTACTAACCACTTGGATGTTGCCAATGT 83806 Query 279812 AGCCTGGCTAGTGTCCTACCTAA----CCAGTCTGAAGAATGTTTCTTCCCTCATTGTCT 279867 ||||| | | |||||| | ||| | || || || | || |||||||| | Sbjct 83805 CAAGTGGCTCGAGAACTACCTCAAGACCCACACCGA-GA---TTACCTCGCTCATTGTTT 83750 Query 279868 CTCACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCC---ATCATTCACTATGAGCAAA 279924 ||||||||||||| ||||| || | || | || || ||| ||||| || | Sbjct 83749 CTCACGACTCTGGTTTCCTTGACGAGGT---CACTACCGATATCTACCACTACGAAGCCA 83693 Query 279925 ATCTGAAGCTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGG 279984 | |||||| | | || |||||||||| ||||||| || | ||||||||||| Sbjct 83692 ACAAGAAGCTGGCTTTGTACCACGGCAACCTGGCTGCTTTTGTTAAGATGCGCCCTGAGG 83633 Query 279985 CGGCCGCCTACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGT 280044 | | ||||| |||| | | | | ||| | ||||| || || Sbjct 83632 CCAAATCTTACTACACCCTGTCAGCTTCGCTTGTCCAGTTCAAGTTCCCCCCTCCTGGTA 83573 Query 280045 TTCTGGAGGGCATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCG---TCTCCT 280101 |||| || ||| || || ||| || ||||| | | || || || || Sbjct 83572 TTCTTACTGGTGTCAAGTCCAACACTCGTGCCATCAT----CCGCATGACGGACGCTACT 83517 Query 280102 TTGC-TTATCCCAATGGCCCCAA--CATCT-TCAGCAGTGTCAACTCGCAGGTTTCTATG 280157 | | || ||||| | |||||| | ||| | |||| || | || | || || Sbjct 83516 TACCAGTACCCCAAGGCCCCCAAGCCCTCTCTGAGCAACGTTTCTTGCCAACTGACTTTG 83457 Query 280158 AACTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTC 280217 ||||| ||| | || || ||||| ||||| |||||||| || || ||||| | Sbjct 83456 TCTTCACGTGTTGCCATTATCGGCCCCAACGGTGCTGGTAAGTCAACTCTCATCAAGATG 83397 Query 280218 CTGACTGGCGAG---ACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGG 280274 ||||||| ||| | || | | | |||| ||| |||||| |||||| |||| Sbjct 83396 TTGACTGGTGAGGTTATCC---CTAGTCAGGGAAGAGTTGAGAAGCACCCCAACCTGCGT 83340 Query 280275 ATGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCT 280334 || | |||| || ||||||||| | | ||| | |||| ||| |||| | ||| || Sbjct 83339 ATCGGTTACATCAAGCAGCACGCTCTTGAGCACGTTGAGATGCACTTGGAGAAGACCCCC 83280 Query 280335 AACCAATACATTCAGTGGCGCTA 280357 ||||| || | |||||||| || Sbjct 83279 AACCAGTATCTCCAGTGGCGTTA 83257 >seq9 Length=401650 Score = 107 bits (118), Expect = 4e-18 Identities = 171/243 (70%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 279324 GCAGAGAAGGAGACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATAT 279383 || ||| |||| |||| |||||||| ||||| |||| |||||||||||| || Sbjct 328149 GCTGAGGAGGACGATGAGGAGGGTGAGGACCTGTGCAACTGCACTTTCTCGCTCGCCTAC 328208 Query 279384 GGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGT 279443 |||| |||||||| || ||| |||| ||| | |||||||| | || || ||| Sbjct 328209 GGTGCCAAGATTCTTCTCAACCAGACCCACCTTCGTCTTAAGCGTGGTCAGCGCTACGGT 328268 Query 279444 CTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAG 279503 || ||||||||| || | || ||| ||| || ||||| ||||| |||| ||| Sbjct 328269 CTTTGCGGTCCCAACGGTTCCGGCAAGTCCACCCTCATGCGTGCCATCAACAACGAGCAG 328328 Query 279504 CTGGAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGA 279562 | | ||| ||||| | ||| || ||||| | ||| || | || ||||||||| | || Sbjct 328329 GTTG-AGGGTTTCCCCAAGCAGTCCGAGGTCAAGACTGTCTTCGTCGAGCACGACCTTGA 328387 Query 279563 CTC 279565 ||| Sbjct 328388 CTC 328390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027831993256965