Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06- 26] 365 sequences; 25,429,610 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq24 161 2e-34 seq14 159 6e-34 seq44 136 7e-27 seq9 122 2e-22 seq38 93.3 8e-14 >seq24 Length=264051 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || |||||||| || |||||||| ||||| ||| Sbjct 250340 CCACCACGGAGACGGAGAACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGAG 250281 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || | | || ||||| || || Sbjct 250280 AGAGTACGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCCGGGGGG 250221 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | |||||| |||||||| |||| || || || Sbjct 250220 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTATCTGACGACTCGACC 250161 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| ||||| || || || |||||||||||||| |||||||| Sbjct 250160 TCAAGGGTAATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 250114 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || || ||||| || || ||||| || |||||| Sbjct 250112 CCACCACGGAGACGAAGGACAAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAG 250053 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || || | || ||||| || ||| Sbjct 250052 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCCGGAGGA 249993 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||| ||| || |||||||| | || || || Sbjct 249992 ATACCCTCCTTGTCCTGGATCTTGGACTTCACGTTGTCAATGGTGTCAGAGGACTCAACC 249933 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || || ||||||||||| || |||||||| Sbjct 249932 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 249886 >seq14 Length=289536 Score = 159 bits (176), Expect = 6e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||| ||| || |||||||| || |||||||| || || || Sbjct 256435 CCACCACGGAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAC 256376 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || || | || ||||| || ||| Sbjct 256375 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGAGGA 256316 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||||||| ||||||||||| | || || || Sbjct 256315 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACC 256256 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||| ||||||||| || ||||| |||||||||||||| Sbjct 256255 TCCAGGGTGATGGTCTTACCCGTCAGGGTCTTGACGAA 256218 >seq44 Length=184135 Score = 136 bits (150), Expect = 7e-27 Identities = 432/668 (65%), Gaps = 15/668 (2%) Strand=Plus/Plus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || |||||||||| ||||||||||||||| | |||| ||| |||||| || | | | Sbjct 83257 TAACGCCACTGGAGATACTGGTTGGGGGTCTTCTCCAAGTGCATCTCAACGTGCTCAAGA 83316 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC 225097 || ||||| | ||| | || |||| |||||| |||||| || ||| || | Sbjct 83317 GCGTGCTGCTTGATGTAACCGATACGCAGGTTGGGGTGCTTCTCAACTCTTCCCTGACTA 83376 Query 225098 GGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCA 225157 || |||| || || | | ||||||||| || | ||| || ||||| |||||||| Sbjct 83377 GGGATAACCTCACCAGTCAACATCTTGATGAGAGTTGACTTACCAGCACCGTTGGGGCCG 83436 Query 225158 ATCACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGCTGA---AGATCTCA 225214 || | | ||| || || |||| | | || | |||||||| | || || Sbjct 83437 ATAATGGCAACACGTGAAGACAAAGTCAGTTGGCAAGAAACGTTGCTCAGAGAGGGCTTG 83496 Query 225215 GGGCCAGTT------TGGTAAGCAAAGGCCACGCCACGCAGCTTCATGATGGCACGGTCC 225268 ||| | | ||||||| | | || | || || | ||||||||||| Sbjct 83497 GGGGCCTTGGGGTACTGGTAAGTAGCGTCC--GTCATGCGG----ATGATGGCACGAGTG 83550 Query 225269 TTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCC 225328 ||||| | | ||| || | || || |||||||| ||| | | || | Sbjct 83551 TTGGACTTGACACCAGTAAGAATACCAGGAGGGGGGAACTTGAACTGGACAAGCGAAGCT 83610 Query 225329 TTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCCG 225388 |||| |||||||||| ||||| || ||| | || ||||||| |||||| ||| Sbjct 83611 GACAGGGTGTAGTAAGATTTGGCCTCAGGGCGCATCTTAACAAAAGCAGCCAGGTTGCCG 83670 Query 225389 AGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCA 225448 ||| | | ||||| ||| ||||| || || | | || ||||| Sbjct 83671 TGGTACAAAGCCAGCTTCTTGTTGGCTTCGTAGTGGTAGATATCGGTAGTGACCTCGTCA 83730 Query 225449 AGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGC 225508 ||||| ||||||||||| || ||||||| || | | | || || |||||||| Sbjct 83731 AGGAAACCAGAGTCGTGAGAAACAATGAGCGAGGTAATCTCGGTGTGGGTCTTGAGGTAG 83790 Query 225509 GTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGG 225568 | |||||| || ||| || |||| |||||| |||||||||||||| | |||| Sbjct 83791 TTCTCGAGCCACTTGACATTGGCAACATCCAAGTGGTTAGTAGGTTCGTCCAGCAACAGG 83850 Query 225569 ATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGAC 225628 | |||||| | | |||||||| | || | |||||||| ||||| || |||||| Sbjct 83851 ACGTCAGCCTTCTGCAACATGGCGCGAGCCAGGGCAAGCTTCATCTTCCAACCACCGGAC 83910 Query 225629 AGGGAGCC 225636 || || || Sbjct 83911 AGCGAACC 83918 >seq9 Length=401650 Score = 122 bits (134), Expect = 2e-22 Identities = 665/1044 (64%), Gaps = 56/1044 (5%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| ||| ||| |||||| |||||| ||||| || |||||| Sbjct 329179 CGCCACTGGATGTACTCCGAGGGAGTCTTGTCCAAGTGGTTATCAATGTGAGCGAAAGCG 329120 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| | ||| || || || ||||| |||| | | ||| | || || Sbjct 329119 TGCTGCTTAATGTAAGCAATACGGATGTTCTCGTGCTGGTAGATCTCACCCTGGGTAGGG 329060 Query 225101 -TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 || || || ||||| ||||| ||||| || || | ||| |||||||| ||||| ||||| Sbjct 329059 ATGAGC-TCACCGGTAAGGACGTTGATCAGAGTCGACTTACCCGCACCGTTGGGACCAAT 329001 Query 225160 CACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCTCAGGGCC 225219 ||| |||| ||||| || | ||| | | || | ||| |||| || Sbjct 329000 GACGGCAATACGGGAACCCAGGGAGCACTGGAAAGAAATGT--CCGAA-ATCTGGGGCTT 328944 Query 225220 AGTTTGGTAAGCAAAGGCCACGCCACG-CAGCTTCATG---------ATGGCACGGTCCT 225269 || |||| | || | ||| || ||| || ||||| | ||| Sbjct 328943 AGA--GGTA--CCGGGGTACTGGAACGACATCTTGGTGGCACGAAGAATGGCCTTGGCCT 328888 Query 225270 TGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCCT 225329 ||| | | |||||| ||||| |||||||||||||| ||| | || | | | | Sbjct 328887 TGGTCTTGACACCCTCAAGGAAACCGGGCTCGGGGAAGCGGAACTCGATCTCAGAGGCGC 328828 Query 225330 TCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCCGA 225389 || ||||||||||| || ||| | ||| ||||| ||| |||||| || Sbjct 328827 CGAGCTCGTAGTAAGACTTGGCAGAGGGGCACTTCTTGACGAACTCAGCCAGGTTACCAC 328768 Query 225390 GGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGCGTCA 225448 ||| | | ||||||| | || |||| |||||||| ||| | ||| || |||| Sbjct 328767 GGTAACGCTTAAGCTTGAAGCGCT---CGTAGTGAACAATGTGCTG-GCAGACATTGTCA 328712 Query 225449 AGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTTGAGGTG 225507 ||||| ||||||||||| || |||||||| || | || | | || | ||||| Sbjct 328711 AGGAAACCAGAGTCGTGAGAGACAATGATCGAAGTGCAAG---GAGAGTTGCA-GAGGTA 328656 Query 225508 CGTGAT-GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCA 225566 || | |||||| ||||| | || |||| ||||| ||||| ||||| ||||||| Sbjct 328655 -GTCCTCGAGCCACTTGACGTTCTTCACATCCAAATGGTTGGTAGGCTCGTCAAGAAGCA 328597 Query 225567 GGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGG 225626 | || || | | | || || ||| || |||| ||||||||| ||||| || || | Sbjct 328596 GAATATCGGGAGCCTCGAAGACGGCACGGCACAGAGCCAGCTTCATCTTCCAACCACCAG 328537 Query 225627 ACAGGGAGCCGATTGAAACAGAGTGCTTAGCTTCGTCA-----AAGCCGTACTCCAGGAG 225681 | |||| | || || | | ||| | | || | ||| | |||| || || Sbjct 328536 AAAGGGCG--GA---AATCTCACCGCTAATCATCTGCTCGGTGAAGTTGAACTCGAGAAG 328482 Query 225682 CGTCTGGATAATGCGCTC------GGGAGAGCTGCGAGCGGC---AACGTTGGGGTCGGA 225732 | || ||| | ||| || || | ||| | || || || Sbjct 328481 CTGCTTGATGACATCCTCCTTGGTGGTAGTGACCTTAGCCTCCTCAAGCTTCTTCATGGT 328422 Query 225733 CGAGAGGTAATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTA 225792 | || ||| || ||||| || | | ||| | ||||| |||||| || ||| | Sbjct 328421 CCAGTC--AATGGTA----GTCATCTCAGTGTCAGCAGAGTCAAGGTCGTGCTCGACGAA 328368 Query 225793 CACCGTCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACG 225852 || ||| || || || | |||||| ||||| | ||| | || || ||||| Sbjct 328367 GACAGTCTTGACCTCGGACTGCTTGGGGAAACCCTCAACCTGCTCGTTGTTGATGGCACG 328308 Query 225853 GAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTT 225912 | ||||| |||||| | |||||||||||| || ||||| | | || ||||| Sbjct 328307 CATGAGGGTGGACTTGCCGGAACCGTTGGGACCGCAAAGACCGTAGCGCTGACCACGCTT 328248 Query 225913 GATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCA 225972 | ||| | || ||| || || |||||| |||| ||||| || ||||| ||| Sbjct 328247 AAGACGAAGGTGGGTCTGGTTGAGAAGAATCTTGGCACCGTAGGCGAGCGAGAAAGTGCA 328188 Query 225973 ATCGCACAGGTCCTCACCCTCCTC 225996 | ||||||||||||||||||||| Sbjct 328187 GTTGCACAGGTCCTCACCCTCCTC 328164 >seq38 Length=199572 Score = 93.3 bits (102), Expect = 8e-14 Identities = 303/469 (65%), Gaps = 10/469 (2%) Strand=Plus/Minus Query 9938 GACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAG 9997 ||| || ||||||||||| || || || |||||||||||||| |||||| |||| Sbjct 77021 GACACCAGCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAG 76962 Query 9998 GGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACCGAG 10057 ||| ||| ||||| ||||| |||||||| || || |||| || ||||| Sbjct 76961 GGAGATGTTTTCCATAAAGTCGAAGGGGTTAGAAGCCTTGTACACCTTGTCGTTGCCGAG 76902 Query 10058 TGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTCAT 10117 || | || ||||| || |||||||||||||| |||| ||||| | |||||| Sbjct 76901 AGCCACCAGAAGACGGTCGGCGACGAACTCGATGTAAGTCTTCATGAGGTCAGCGTTCAT 76842 Query 10118 GCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGCTTC 10177 |||| | |||||| | || || || ||| ||||| ||| | | || || || Sbjct 76841 ACCAAGAAGAGCGCAGGGAAGAGCCTCAGTAAGGAACTCCTTCTCGATAACAACGGCATC 76782 Query 10178 CTCGACGATGCTCTTTACCACGT-----CAAGGGACAGCTTGTTCTCGAGCTTCGAATAC 10232 || ||| || | || | | |||| | |||||| | | || | Sbjct 76781 AGTGATAATGTCCTGGATCAACTGCTTGCTAGGG--CGGTTGTTC---AAGTGAGAGAAA 76727 Query 10233 AGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAA 10292 || || |||| | ||| || ||||| || ||| ||| | |||||| || || Sbjct 76726 AGAAGGCAGGCAAAGTCGGTGTGAAGACCCTCATCACGGGAGATCAGCTCGTTTGAGAAG 76667 Query 10293 CCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAG 10352 || ||||||||| | || || ||||||||||| || || | | || | || ||| Sbjct 76666 GTCAAACCGGGCATCATACCACGCTTGCGCAGCCAAAAGATAGAGGCAAAGGCACCAGAG 76607 Query 10353 AACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGG 10401 || | | |||||| ||| | |||| || || |||| || |||| Sbjct 76606 AAGAAGATACCCTCAACGGCAGCAAAGGCAACCAGACGCTGGGCAAAGG 76558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921618195097800