Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06-
26] 365 sequences; 25,429,610 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq24 161 2e-34
seq14 159 6e-34
seq44 136 7e-27
seq9 122 2e-22
seq38 93.3 8e-14
>seq24
Length=264051
Score = 161 bits (178), Expect = 2e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||||||| || |||||||| || |||||||| ||||| |||
Sbjct 250340 CCACCACGGAGACGGAGAACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGAG 250281
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| |||||||| || | | || ||||| || ||
Sbjct 250280 AGAGTACGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCCGGGGGG 250221
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| || ||||| | |||||| |||||||| |||| || || ||
Sbjct 250220 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTATCTGACGACTCGACC 250161
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||| ||||| || || || |||||||||||||| ||||||||
Sbjct 250160 TCAAGGGTAATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 250114
Score = 143 bits (158), Expect = 5e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | || | ||| || || ||||| || || ||||| || ||||||
Sbjct 250112 CCACCACGGAGACGAAGGACAAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAG 250053
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || ||||| || || | || ||||| || |||
Sbjct 250052 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCCGGAGGA 249993
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| || ||||| | ||| ||| || |||||||| | || || ||
Sbjct 249992 ATACCCTCCTTGTCCTGGATCTTGGACTTCACGTTGTCAATGGTGTCAGAGGACTCAACC 249933
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||||||| || || || ||||||||||| || ||||||||
Sbjct 249932 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 249886
>seq14
Length=289536
Score = 159 bits (176), Expect = 6e-34
Identities = 166/218 (76%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||| ||| || |||||||| || |||||||| || || ||
Sbjct 256435 CCACCACGGAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAC 256376
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || ||||| || || | || ||||| || |||
Sbjct 256375 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGAGGA 256316
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| || ||||| | ||||||| ||||||||||| | || || ||
Sbjct 256315 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACC 256256
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452
|||| ||||||||| || ||||| ||||||||||||||
Sbjct 256255 TCCAGGGTGATGGTCTTACCCGTCAGGGTCTTGACGAA 256218
>seq44
Length=184135
Score = 136 bits (150), Expect = 7e-27
Identities = 432/668 (65%), Gaps = 15/668 (2%)
Strand=Plus/Plus
Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037
|| |||||||||| ||||||||||||||| | |||| ||| |||||| || | | |
Sbjct 83257 TAACGCCACTGGAGATACTGGTTGGGGGTCTTCTCCAAGTGCATCTCAACGTGCTCAAGA 83316
Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC 225097
|| ||||| | ||| | || |||| |||||| |||||| || ||| || |
Sbjct 83317 GCGTGCTGCTTGATGTAACCGATACGCAGGTTGGGGTGCTTCTCAACTCTTCCCTGACTA 83376
Query 225098 GGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCA 225157
|| |||| || || | | ||||||||| || | ||| || ||||| ||||||||
Sbjct 83377 GGGATAACCTCACCAGTCAACATCTTGATGAGAGTTGACTTACCAGCACCGTTGGGGCCG 83436
Query 225158 ATCACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGCTGA---AGATCTCA 225214
|| | | ||| || || |||| | | || | |||||||| | || ||
Sbjct 83437 ATAATGGCAACACGTGAAGACAAAGTCAGTTGGCAAGAAACGTTGCTCAGAGAGGGCTTG 83496
Query 225215 GGGCCAGTT------TGGTAAGCAAAGGCCACGCCACGCAGCTTCATGATGGCACGGTCC 225268
||| | | ||||||| | | || | || || | |||||||||||
Sbjct 83497 GGGGCCTTGGGGTACTGGTAAGTAGCGTCC--GTCATGCGG----ATGATGGCACGAGTG 83550
Query 225269 TTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCC 225328
||||| | | ||| || | || || |||||||| ||| | | || |
Sbjct 83551 TTGGACTTGACACCAGTAAGAATACCAGGAGGGGGGAACTTGAACTGGACAAGCGAAGCT 83610
Query 225329 TTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCCG 225388
|||| |||||||||| ||||| || ||| | || ||||||| |||||| |||
Sbjct 83611 GACAGGGTGTAGTAAGATTTGGCCTCAGGGCGCATCTTAACAAAAGCAGCCAGGTTGCCG 83670
Query 225389 AGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCA 225448
||| | | ||||| ||| ||||| || || | | || |||||
Sbjct 83671 TGGTACAAAGCCAGCTTCTTGTTGGCTTCGTAGTGGTAGATATCGGTAGTGACCTCGTCA 83730
Query 225449 AGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGC 225508
||||| ||||||||||| || ||||||| || | | | || || ||||||||
Sbjct 83731 AGGAAACCAGAGTCGTGAGAAACAATGAGCGAGGTAATCTCGGTGTGGGTCTTGAGGTAG 83790
Query 225509 GTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGG 225568
| |||||| || ||| || |||| |||||| |||||||||||||| | ||||
Sbjct 83791 TTCTCGAGCCACTTGACATTGGCAACATCCAAGTGGTTAGTAGGTTCGTCCAGCAACAGG 83850
Query 225569 ATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGAC 225628
| |||||| | | |||||||| | || | |||||||| ||||| || ||||||
Sbjct 83851 ACGTCAGCCTTCTGCAACATGGCGCGAGCCAGGGCAAGCTTCATCTTCCAACCACCGGAC 83910
Query 225629 AGGGAGCC 225636
|| || ||
Sbjct 83911 AGCGAACC 83918
>seq9
Length=401650
Score = 122 bits (134), Expect = 2e-22
Identities = 665/1044 (64%), Gaps = 56/1044 (5%)
Strand=Plus/Minus
Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040
|||||||||||||||| ||| ||| |||||| |||||| ||||| || ||||||
Sbjct 329179 CGCCACTGGATGTACTCCGAGGGAGTCTTGTCCAAGTGGTTATCAATGTGAGCGAAAGCG 329120
Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100
||||| | ||| || || || ||||| |||| | | ||| | || ||
Sbjct 329119 TGCTGCTTAATGTAAGCAATACGGATGTTCTCGTGCTGGTAGATCTCACCCTGGGTAGGG 329060
Query 225101 -TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159
|| || || ||||| ||||| ||||| || || | ||| |||||||| ||||| |||||
Sbjct 329059 ATGAGC-TCACCGGTAAGGACGTTGATCAGAGTCGACTTACCCGCACCGTTGGGACCAAT 329001
Query 225160 CACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCTCAGGGCC 225219
||| |||| ||||| || | ||| | | || | ||| |||| ||
Sbjct 329000 GACGGCAATACGGGAACCCAGGGAGCACTGGAAAGAAATGT--CCGAA-ATCTGGGGCTT 328944
Query 225220 AGTTTGGTAAGCAAAGGCCACGCCACG-CAGCTTCATG---------ATGGCACGGTCCT 225269
|| |||| | || | ||| || ||| || ||||| | |||
Sbjct 328943 AGA--GGTA--CCGGGGTACTGGAACGACATCTTGGTGGCACGAAGAATGGCCTTGGCCT 328888
Query 225270 TGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCCT 225329
||| | | |||||| ||||| |||||||||||||| ||| | || | | | |
Sbjct 328887 TGGTCTTGACACCCTCAAGGAAACCGGGCTCGGGGAAGCGGAACTCGATCTCAGAGGCGC 328828
Query 225330 TCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCCGA 225389
|| ||||||||||| || ||| | ||| ||||| ||| |||||| ||
Sbjct 328827 CGAGCTCGTAGTAAGACTTGGCAGAGGGGCACTTCTTGACGAACTCAGCCAGGTTACCAC 328768
Query 225390 GGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGCGTCA 225448
||| | | ||||||| | || |||| |||||||| ||| | ||| || ||||
Sbjct 328767 GGTAACGCTTAAGCTTGAAGCGCT---CGTAGTGAACAATGTGCTG-GCAGACATTGTCA 328712
Query 225449 AGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTTGAGGTG 225507
||||| ||||||||||| || |||||||| || | || | | || | |||||
Sbjct 328711 AGGAAACCAGAGTCGTGAGAGACAATGATCGAAGTGCAAG---GAGAGTTGCA-GAGGTA 328656
Query 225508 CGTGAT-GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCA 225566
|| | |||||| ||||| | || |||| ||||| ||||| ||||| |||||||
Sbjct 328655 -GTCCTCGAGCCACTTGACGTTCTTCACATCCAAATGGTTGGTAGGCTCGTCAAGAAGCA 328597
Query 225567 GGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGG 225626
| || || | | | || || ||| || |||| ||||||||| ||||| || || |
Sbjct 328596 GAATATCGGGAGCCTCGAAGACGGCACGGCACAGAGCCAGCTTCATCTTCCAACCACCAG 328537
Query 225627 ACAGGGAGCCGATTGAAACAGAGTGCTTAGCTTCGTCA-----AAGCCGTACTCCAGGAG 225681
| |||| | || || | | ||| | | || | ||| | |||| || ||
Sbjct 328536 AAAGGGCG--GA---AATCTCACCGCTAATCATCTGCTCGGTGAAGTTGAACTCGAGAAG 328482
Query 225682 CGTCTGGATAATGCGCTC------GGGAGAGCTGCGAGCGGC---AACGTTGGGGTCGGA 225732
| || ||| | ||| || || | ||| | || || ||
Sbjct 328481 CTGCTTGATGACATCCTCCTTGGTGGTAGTGACCTTAGCCTCCTCAAGCTTCTTCATGGT 328422
Query 225733 CGAGAGGTAATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTA 225792
| || ||| || ||||| || | | ||| | ||||| |||||| || ||| |
Sbjct 328421 CCAGTC--AATGGTA----GTCATCTCAGTGTCAGCAGAGTCAAGGTCGTGCTCGACGAA 328368
Query 225793 CACCGTCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACG 225852
|| ||| || || || | |||||| ||||| | ||| | || || |||||
Sbjct 328367 GACAGTCTTGACCTCGGACTGCTTGGGGAAACCCTCAACCTGCTCGTTGTTGATGGCACG 328308
Query 225853 GAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTT 225912
| ||||| |||||| | |||||||||||| || ||||| | | || |||||
Sbjct 328307 CATGAGGGTGGACTTGCCGGAACCGTTGGGACCGCAAAGACCGTAGCGCTGACCACGCTT 328248
Query 225913 GATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCA 225972
| ||| | || ||| || || |||||| |||| ||||| || ||||| |||
Sbjct 328247 AAGACGAAGGTGGGTCTGGTTGAGAAGAATCTTGGCACCGTAGGCGAGCGAGAAAGTGCA 328188
Query 225973 ATCGCACAGGTCCTCACCCTCCTC 225996
| |||||||||||||||||||||
Sbjct 328187 GTTGCACAGGTCCTCACCCTCCTC 328164
>seq38
Length=199572
Score = 93.3 bits (102), Expect = 8e-14
Identities = 303/469 (65%), Gaps = 10/469 (2%)
Strand=Plus/Minus
Query 9938 GACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAG 9997
||| || ||||||||||| || || || |||||||||||||| |||||| ||||
Sbjct 77021 GACACCAGCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAG 76962
Query 9998 GGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACCGAG 10057
||| ||| ||||| ||||| |||||||| || || |||| || |||||
Sbjct 76961 GGAGATGTTTTCCATAAAGTCGAAGGGGTTAGAAGCCTTGTACACCTTGTCGTTGCCGAG 76902
Query 10058 TGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTCAT 10117
|| | || ||||| || |||||||||||||| |||| ||||| | ||||||
Sbjct 76901 AGCCACCAGAAGACGGTCGGCGACGAACTCGATGTAAGTCTTCATGAGGTCAGCGTTCAT 76842
Query 10118 GCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGCTTC 10177
|||| | |||||| | || || || ||| ||||| ||| | | || || ||
Sbjct 76841 ACCAAGAAGAGCGCAGGGAAGAGCCTCAGTAAGGAACTCCTTCTCGATAACAACGGCATC 76782
Query 10178 CTCGACGATGCTCTTTACCACGT-----CAAGGGACAGCTTGTTCTCGAGCTTCGAATAC 10232
|| ||| || | || | | |||| | |||||| | | || |
Sbjct 76781 AGTGATAATGTCCTGGATCAACTGCTTGCTAGGG--CGGTTGTTC---AAGTGAGAGAAA 76727
Query 10233 AGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAA 10292
|| || |||| | ||| || ||||| || ||| ||| | |||||| || ||
Sbjct 76726 AGAAGGCAGGCAAAGTCGGTGTGAAGACCCTCATCACGGGAGATCAGCTCGTTTGAGAAG 76667
Query 10293 CCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAG 10352
|| ||||||||| | || || ||||||||||| || || | | || | || |||
Sbjct 76666 GTCAAACCGGGCATCATACCACGCTTGCGCAGCCAAAAGATAGAGGCAAAGGCACCAGAG 76607
Query 10353 AACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGG 10401
|| | | |||||| ||| | |||| || || |||| || ||||
Sbjct 76606 AAGAAGATACCCTCAACGGCAGCAAAGGCAACCAGACGCTGGGCAAAGG 76558
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921618195097800
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