Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06- 26] 365 sequences; 25,429,610 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq24 113 4e-20 seq14 89.7 4e-13 >seq24 Length=264051 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | ||||| || || ||||||||||| ||| Sbjct 250115 ATACCACCACGGAGACGAAGGACAAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCG 250056 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||| ||||| || || |||||| | || |||||||| ||||||||| Sbjct 250055 GAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCCGGA 249996 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| ||||| || | | |||| |||||| | ||| || Sbjct 249995 GGAATACCCTCCTTGTCCTGGATCTTGGACTTCACGTTGTCAATGGTGTCAGAGGACTCA 249936 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| ||||| || || ||||| |||||||| Sbjct 249935 ACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 249886 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | || || || || ||||||||||| ||| Sbjct 249887 ATACCACCACGAAGGCGGAGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCG 249828 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || ||| ||| ||||| || || |||||| | || || ||||| |||||||| Sbjct 249827 GAGAGGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAAATAAGGCGCTGCTGGTCCGGG 249768 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| |||||| || | | |||| ||||||| ||| ||| Sbjct 249767 GGAATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAGGACTCG 249708 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGT 114358 || || | ||| | || |||||||| Sbjct 249707 ACCTCGAGGGTGATGGTCTTGCCGGT 249682 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| || || | || || || || || ||||||||||| Sbjct 250343 ATACCACCACGGAGACGGAGAACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCC 250284 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| ||| ||||| || || || ||| | || | |||||| |||||||| Sbjct 250283 GAGAGAGTACGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCCGGG 250224 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| ||||| || | | || | ||| || | || ||| Sbjct 250223 GGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTATCTGACGACTCG 250164 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| ||||| || || || || |||||||| Sbjct 250163 ACCTCAAGGGTAATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 250114 >seq14 Length=289536 Score = 89.7 bits (98), Expect = 4e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || || || || ||| ||||| || || ||| Sbjct 256405 GTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCA 256346 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || ||||| |||||||||||||| || || ||||| ||||| || Sbjct 256345 GCGAAGATCAGGCGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTGGACTTG 256286 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| | ||| ||||| |||| ||| | || || || ||||| || Sbjct 256285 ACGTTGTCGATGGTGTCCGAGGACTCGACCTCCAGGGTGATGGTCTTACCCGTCAGGGTC 256226 Query 114366 TTTACAAAA 114374 || || ||| Sbjct 256225 TTGACGAAA 256217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420132531058380