Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06- 26] 365 sequences; 25,429,610 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq59 140 4e-28 seq38 105 8e-18 seq17 98.7 1e-15 >seq59 Length=151500 Score = 140 bits (154), Expect = 4e-28 Identities = 655/1028 (64%), Gaps = 18/1028 (2%) Strand=Plus/Plus Query 113903 TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGC 113962 |||||||| |||||||| || | || | | | || || |||| ||||| ||| Sbjct 86280 TTGACAACCTGGAACTCACCAGCCAACACACGGCGCTGGTAAATGTTGGAAGTGTAAGGC 86339 Query 113963 TCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATG 114022 || |||||||| |||||||||| || |||| || |||||||||||||| || |||| Sbjct 86340 TCGAAGCACTCGTTGTTACCCAGAATCTGGGACGTCGAGGCTGTGGGCATAGGGGCCAAA 86399 Query 114023 AGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGT--CGT 114080 |||||| ||| || | ||| | | | | || | ||||| | | || ||||| | Sbjct 86400 AGAAGGGAGTTGCGAACACCGTGCTGCTTGATCTGGTCCTTCAAAGAGTTCCAGTCCCAC 86459 Query 114081 AGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCG 114140 || | | || | | | | |||||| || ||||| |||||||| || ||| | || | Sbjct 86460 AGGTCA-CTGGGGGT-AACATCCCACATGTCGAACTGAAGGATACCCTGAGAGACAGGAG 86517 Query 114141 ATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGG 114200 | ||||| | ||| ||| || || |||| || | ||| | ||||||||||| Sbjct 86518 AACCCTCGTAGGTCGAGTAGGGACCTTCAAGAATAGCAATATCGCACGACGCCTCGAGGG 86577 Query 114201 CTGCGTGATACATTGTCTCAAAAATGCGAGCATTCA-TTGCCTTGGCCTCGTCGGAATCA 114259 | ||||| || || |||||||| || | || | || | |||||| | || ||| Sbjct 86578 CAGCGTGGTAAATGGTCTCAAAGATCTGCTTGTTGAGCTGAC-GGGCCTCAGCAGACTCA 86636 Query 114260 AACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGG 114319 || | | || | || |||| || ||||| || ||||| | || || ||| Sbjct 86637 AAAGGCATGCGAAGGGCCAGGAAGGCATCAGCCAGACCCTGAACACCAACACCGATGGGG 86696 Query 114320 CGATGTCTCATATTAGACTTTCGAGCGGTCTC---CACGGGATAAAAATTCCTATCGATA 114376 || || | ||| || || || || ||| ||||| || ||| ||| ||| Sbjct 86697 CGGTGGCGCATGTTGCTGTTACG---GGCCTCGATAACGGGGTAGTGGTTCACATCAATA 86753 Query 114377 ACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAA 114436 | | || | || || ||||| |||| || || ||||| | | | || | Sbjct 86754 ATGCGGTTCAAGTTGCGAACAACGACCTTGGTGACATCGTGCAGCTTCTGGAAGTCGTAG 86813 Query 114437 CTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAG 114496 | | | | | ||| | |||||| || | || ||||| || ||||| | Sbjct 86814 GAGTTGTTGTTGTAGTCAACAAAGGCAGGAAGAGCAAGAGAAGCCAGGTTGCACACGGCA 86873 Query 114497 GTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTG 114556 |||||| | | |||||| || || || || || | || ||||| ||| || Sbjct 86874 ACCTCATCGGGAGCGCAGTACTCGATGATCTCAGTGCAAAGGTTGGAACTGCGAATAGTT 86933 Query 114557 CCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTC 114616 |||| |||||| || || ||| ||| || ||||||||| |||||| | || | Sbjct 86934 CCCAGGTTCTTCTGGTTACTCTTGCGGTTGCAGTGATCCTTGTACAGCATGAAAGGGTTA 86993 Query 114617 CCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAGT--G 114673 || ||||| || || | || | ||||| | ||| | | || | ||| | || | Sbjct 86994 CCAGTCTCAGTCTGAGCCTCCAAGATAGCATACCACAGCTTCTG-GGCCTTAATGGTCAG 87052 Query 114674 GCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACG 114733 || | | || ||||||| |||||||| || ||||| || ||||| || || || | Sbjct 87053 ACG--GCCACGTCCCTCCTGTTCGTACTTGGTATAGAGAGCCTCAAATTCATCGCCATAG 87110 Query 114734 GCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCA 114793 || | || || || || | ||||| | ||||| ||| | || || |||| Sbjct 87111 CAGTCAGCCAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTTGCCGTTCTTCTCA 87170 Query 114794 ACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCT 114853 |||||||||||||| | || || ||||| | || ||| | ||| ||| ||| Sbjct 87171 ACACGCTTCATGAACAAATCAGGAATCCACAAGGCAAGGAACAAATCGCGAGCACGAATC 87230 Query 114854 TCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGT 114913 || || | || || || || | || | || || | | ||| ||||||||||| Sbjct 87231 TCCTCCTTACCGTGGTTCTTCCGGAGATCAAGGAACTCGAACACATCAGCGTGCCACGGC 87290 Query 114914 TCCAGGTA 114921 |||||||| Sbjct 87291 TCCAGGTA 87298 >seq38 Length=199572 Score = 105 bits (116), Expect = 8e-18 Identities = 341/523 (65%), Gaps = 11/523 (2%) Strand=Plus/Minus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 |||||| || ||| |||||||| ||||||||||| || || || |||||| || || Sbjct 76718 GGCAAAGTCGGTGTGAAGACCCTCATCACGGGAGATCAGCTCGTTTGAGAAGGTCAAACC 76659 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 ||||| | ||| ||||| || ||| || || | ||| | ||| ||||||||||| Sbjct 76658 GGGCATCATACCACGCTTGCGCAGCCAAAAGATAGAGGCAAAGGCACCAGAGAAGAAGAT 76599 Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACT--TTGT-GTC 126222 ||||| || || || |||| ||||||| ||||||| ||||| |||| | Sbjct 76598 ACCCTCAACGGCAGCAAAGGCAACCAGACGCTGGGCAAAGG---TCGACTCCTTGTCGGT 76542 Query 126223 AAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTC 126282 || |||||||| ||||| | ||||| ||| || || | ||| | || || | Sbjct 76541 AATCCACTTCAGGGCCCAGTCGGCCTTGCGGCGGATGCAAGGAATGGTATCAATGGCGTT 76482 Query 126283 AAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGT 126342 || || | | | | | || || |||||||| |||| || || || || || Sbjct 76481 GAACAGGTACGTGCGCTGAGCAGGCTCCTTGATGTAGGTATCGATCAGGAGGGAGTACGT 76422 Query 126343 TTCGCCGTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTA 126401 || ||| | | | ||| || ||| | |||| || |||| || ||| | Sbjct 76421 CTCCGAGTGAATGTTCTCCATCAT-AATCTGGAAACCGTAAAAGCAGCGGGCCTCGGGAA 76363 Query 126402 TCTGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAG 126461 |||| ||||| | | ||| | | ||||| ||||| || || || ||| Sbjct 76362 TCTGCACCTCGGCAGAGAAACGCTCGACCAAGTTCTCGTTGACAATACCGTCAGAGGCAG 76303 Query 126462 CAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCC 126518 | || || || |||| | ||||| |||||||| || | ||| || | |||| Sbjct 76302 CGAAGAAGGCAAGGACGTGAGAGATGAAGAACTGTTCATCCTTGGTCATGCGGTTGTTCC 76243 Query 126519 AGTCGTCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 126561 |||||| ||||||||| || | || | |||||| |||||||| Sbjct 76242 AGTCGTGAAGATCCTTGGACAAGTCAATCTCCTCGGCAGTCCA 76200 >seq17 Length=280677 Score = 98.7 bits (108), Expect = 1e-15 Identities = 202/293 (69%), Gaps = 12/293 (4%) Strand=Plus/Plus Query 172618 GAGACCCTTAATGTGTGAACCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATA 172677 ||||||||| || || |||||||||| |||| ||| | ||| ||||| || ||||||| Sbjct 146577 GAGACCCTTGATATGCGAACCATCGTGATCCTGATCGGCCATGATCATCAGATGACCATA 146636 Query 172678 GCGAAGCTC---GGAAACATCTTG-ATACT-CCTTACCCTGTTGAAGACCCAAGATCTTC 172732 |||||| | || | | | || | ||| |||| || | ||||||||||| || Sbjct 146637 ACGAAGCCCCTTGGTATC--CGTGTAAACTGCCTTG---TGCTTAAGACCCAAGAACTGT 146691 Query 172733 TTGAGATCATTGAA-CTCTTGGTTTGATGTGAGTTGCGCCACTGAAGCATCGCGGACATT 172791 |||| || ||||| || ||||| || | || ||| |||||||| || || || Sbjct 146692 TTGATAT-TTTGAATTTCCTGGTTCTTGGTAATCTGGTCCAAAGAAGCATCACGAACGTT 146750 Query 172792 TTTACACTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAAAGACC 172851 ||| |||||||| ||||| ||||| | | ||| || | | | | | |||| Sbjct 146751 GAGCATCTTACCACGGAGTGGGAAAACACCAATGCGGTCAGGATCCAAAATGGCACGACC 146810 Query 172852 AGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACACT 172904 |||||| || | | ||| || || ||||| || |||| || || ||||||| Sbjct 146811 AGCAACGGCCAAAGACTTGGCCGAGTCACCTTCGGTCAGAATCAGAGTACACT 146863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597350874574200