Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06-
26] 365 sequences; 25,429,610 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq24 105 7e-18
>seq24
Length=264051
Score = 105 bits (116), Expect = 7e-18
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
||| || || || | || || || || ||||||||||| || | || |||||| | ||
Sbjct 250098 AAGGACAAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATC 250039
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
|||||||||||||| || |||| || ||||||||||| |||||||| || || || ||
Sbjct 250038 CTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTC 249979
Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| || || ||| || || | || ||| || || || || | || | |||
Sbjct 249978 CTGGATCTTGGACTTCACGTTGTCAATGGTGTCAGAGGACTCAACCTCAAGGGTGATGGT 249919
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|||||| |||| || || || || || |||||
Sbjct 249918 CTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 249886
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300
|||| || || || || || ||||||||||| | || || || | || |||||||||
Sbjct 250316 TGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGAGAGAGTACGGCCATCCTCAAGCTGC 250257
Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360
|||||||| |||| | ||||||||||| || || || || || || || || || ||
Sbjct 250256 TTGCCGGCGAAAATCAAACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTG 250197
Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420
||| ||| || | ||||| | || || || | || | ||||||||| |||
Sbjct 250196 GACTTGACATTGTCGATGGTATCTGACGACTCGACCTCAAGGGTAATGGTCTTGCCAGTC 250137
Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443
| || || ||||| || |||||
Sbjct 250136 AGGGTCTTGACGAAGATCTGCAT 250114
Score = 89.7 bits (98), Expect = 5e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| || || || || |||||||| || | | ||| || |||| || |||||||| ||
Sbjct 250538 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCGTCCTCCAGCTGCTTACCA 250479
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
||| | || || |||||||||||||| || || || || || || || || || |||
Sbjct 250478 GCAAAGATAAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGCTCTTC 250419
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
|| || | |||||| | || ||||| | ||| | |||||| || || | |||
Sbjct 250418 ACGTTGTCAATGGTATCAGAAGACTCGACTTCAAGAGTGATGGTCTTTCCAGTGAGAGTC 250359
Query 64427 TTTACGAAAATTTGCAT 64443
|| ||||| || |||||
Sbjct 250358 TTCACGAAGATCTGCAT 250342
Score = 87.8 bits (96), Expect = 2e-12
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || || |||| || || || || ||||||||||| || | || |||||| | ||
Sbjct 249869 AGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGACCATCC 249810
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
||||||||||| || || |||| || ||||||||||| || ||||| || || || ||
Sbjct 249809 TCAAGCTGCTTTCCAGCGAAAATAAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCC 249750
Query 64352 TGTATTTT 64359
|| || ||
Sbjct 249749 TGAATCTT 249742
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499642520370600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |