Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06- 26] 365 sequences; 25,429,610 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq59 156 4e-33 >seq59 Length=151500 Score = 156 bits (172), Expect = 4e-33 Identities = 486/741 (66%), Gaps = 16/741 (2%) Strand=Plus/Minus Query 93898 CCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT-GAC 93956 || ||||| |||||||| || || || ||| ||| | ||||| || ||| || | ||| Sbjct 87589 CCTACCCTCTTCAACGCTGGTACTCCCCAGCCCCAGCTTTCTTCTTGCTTCTTGGTAGAC 87530 Query 93957 GAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTC 94016 | |||| ||| ||| || || | |||| ||||||| || || | ||||| Sbjct 87529 -ATGAAGGAGGACAGTATCGAAGGTATCTATGACACCCTCAAGACTTGCGCTATGATCTC 87471 Query 94017 AAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTA--CGTGCCAGGGGTTCCTAC 94074 || ||||| || || || ||| || ||| |||| ||||| | ||||| ||| Sbjct 87470 CAAGATGGCGGGTGGCATTGGTCTCAACGTACAC--CGTATCCGTGCTACTGGTTCTTAC 87413 Query 94075 ATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAAC 94134 || || ||||| || ||||| ||||| | || || ||| | || ||||||||||| Sbjct 87412 ATTGCTGGCACCAACGGTACCTCGAACGGTATTGTTCCCATGTTGCGTGTCTTCAACAAT 87353 Query 94135 GCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTC 94194 | || || ||||| || ||||||||| | | | ||| |||| || | || || Sbjct 87352 ACTGCTCGTTACGTCGATCAGGGTGGTAACAAGCGTCCCGGTGCTTTTGCCATTTACCTG 87293 Query 94195 GAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGAT 94254 ||||| |||||||| || ||| | ||| | || || || ||||||||||| || || Sbjct 87292 GAGCCGTGGCACGCTGATGTGTTCGAGTTCCTTGATCTCCGGAAGAACCACGGTAAGGA- 87234 Query 94255 CTGGAGA---GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 ||||| | || | || | ||| || | ||| | || || | || ||||| Sbjct 87233 --GGAGATTCGTGCTCGCGATTTGTTCCTTGCCTTGTGGATTCCTGATTTGTTCATGAAG 87176 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 || || ||||| ||| | ||||| ||| | || ||||| || || || || ||| | Sbjct 87175 CGTGTTGAGAAGAACGGCAACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTGGCT 87116 Query 94372 GACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGG-CAAGGC 94430 ||| | ||| ||||| | | ||| | |||||| | |||| | ||| Sbjct 87115 GACTGCTATGGCGATGAATTTGAGGCTCTCTATACCAAGTACGAACAGGAGGGACGTGGC 87056 Query 94431 CAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGAC 94490 | | | || | || |||||||||| || ||| |||| | ||| ||||| Sbjct 87055 C-GTCTGACCATTAAGGCCCAGAAGCTGTGGTATGCTATCTTGGAGGCTCAGACTGAGAC 86997 Query 94491 GGGTACGCCCTACATCTTGTTCAAGGA-CTCTGTCAACGCCAAGTCCAACCAGCAGCACC 94549 |||| || | ||| ||| |||||| | ||| |||| |||| |||||| || ||| Sbjct 86996 TGGTAACCCTTTCATGCTGTACAAGGATCACTG-CAACCGCAAGAGTAACCAGAAGAACC 86938 Query 94550 TCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACG 94609 | || || || || || || ||||| ||||| ||||||| |||| || | Sbjct 86937 TGGGAACTATTCGCAGTTCCAACCTTTGCACTGAGATCATCGAGTACTGCGCTCCCGATG 86878 Query 94610 AGATTGCTGTGTGTAACCTGG 94630 || |||| ||||| ||||||| Sbjct 86877 AGGTTGCCGTGTGCAACCTGG 86857 Score = 136 bits (150), Expect = 4e-27 Identities = 262/383 (68%), Gaps = 4/383 (1%) Strand=Plus/Minus Query 94993 CAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAA 95052 ||||| || ||||||||||| | |||| ||| | ||| | |||| |||||| | Sbjct 86506 CAGGGTATCCTTCAGTTCGACATGTGGGATGTTACCCCCAGTGACCTGTGGGACTGGAAC 86447 Query 95053 GCTCT--ACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCA 95110 || | | | | ||| | || |||||||| ||| | || ||| ||||||| | Sbjct 86446 TCTTTGAAGGACCAGATCA-AGCAG-CACGGTGTTCGCAACTCCCTTCTTTTGGCCCCTA 86389 Query 95111 TGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCT 95170 ||||||| ||||| ||| | ||||| || || |||||||||| ||||| || | ||| | Sbjct 86388 TGCCCACAGCCTCGACGTCCCAGATTCTGGGTAACAACGAGTGCTTCGAGCCTTACACTT 86329 Query 95171 CCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCC 95230 ||||| | ||| | | || ||| | || || || |||| || ||||| | | | Sbjct 86328 CCAACATTTACCAGCGCCGTGTGTTGGCTGGTGAGTTCCAGGTTGTCAACCCGTGGTTGC 86269 Query 95231 TACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCG 95290 | || |||||| || ||| ||||| ||||| | ||||||| | | || Sbjct 86268 TTCGTGACCTGGTTGACCTTGGTCTGTGGTCCGACAACATGAAGAACCGTATCATTTCCG 86209 Query 95291 CCAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGA 95350 |||||| || ||||||||||||| || || | ||||||||| | || ||||||| Sbjct 86208 ACAACGGTTCTATCCAGAACATCCCCAGCATTCCTGCTGACATCAAGTCTCTGTACAAGA 86149 Query 95351 CCGTGTGGGAGATCCCGCAGCGC 95373 | || |||||||| | |||||| Sbjct 86148 CGGTTTGGGAGATTTCTCAGCGC 86126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494720942825400