Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06- 26] 365 sequences; 25,429,610 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq38 111 2e-19 seq24 98.7 1e-15 >seq38 Length=199572 Score = 111 bits (122), Expect = 2e-19 Identities = 329/502 (66%), Gaps = 19/502 (4%) Strand=Plus/Plus Query 52344 AAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCG---CCACGCTGGCCGAGCGC 52400 ||||| | ||||| |||||||||| | ||||| | | || | ||| |||| Sbjct 76515 AAGGCCGACTGGGCCCTGAAGTGGATT---ACCGACAAGGAGTCGACCTTTGCCCAGCGT 76571 Query 52401 ATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTT 52460 |||| ||||| || || ||||| | || || || || ||||||| | |||||| Sbjct 76572 CTGGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCTCTGGTGCCTTTGCCTCTATCTTT 76631 Query 52461 TACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGC 52520 | | | | || || |||||||| |||| ||| |||||| |||| || || Sbjct 76632 TGGCTGCGCAAGCGTGGTATGATGCCCGGTTTGACCTTCTCAAACGAGCTGATCTCCCGT 76691 Query 52521 GACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAA 52580 || || || || ||||| |||||||| ||||| | | | | | ||| | || Sbjct 76692 GATGAGGGTCTTCACACCGACTTTGCCTGCCTTCTTTTCT---CTCACTTGAAC----AA 76744 Query 52581 TTGGATTCGGACAC----GATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGA 52636 | | | | | ||||| | ||| ||| || || || | |||||| ||||| Sbjct 76745 CCGCCCTAGCAAGCAGTTGATCCAGGACATTATCACTGATGCCGTTGTTATCGAGAAGGA 76804 Query 52637 GTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGA 52696 ||| |||| | || || || || || || || |||||||| | |||| Sbjct 76805 GTTCCTTACTGAGGCTCTTCCCTGCGCTCTTCTTGGTATGAACGCTGACCTCATGAAGAC 76864 Query 52697 GTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA-AAGTACTTCA 52755 ||||||||||| || || || ||||| ||||| ||| |||| | | ||| | || Sbjct 76865 TTACATCGAGTTCGTCGCCGACCGTCTTCTGGTGGCTCTC-GGCAACGACAAGGTGTACA 76923 Query 52756 ACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTT 52815 | ||| || || || || |||||| | ||||| || || | |||||||||||||| | Sbjct 76924 AGGCTTCTAACCCCTTCGACTTTATGGAAAACATCTCCCTCGGTGGCAAGACCAACTTCT 76983 Query 52816 TCGAGAAGCGAGTCGGCGAGTA 52837 |||||||||| ||||| || || Sbjct 76984 TCGAGAAGCGTGTCGGTGACTA 77005 >seq24 Length=264051 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||| | || || ||||| || || || || | Sbjct 250079 GACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCG 250020 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || |||||||| ||||||||||| ||||| || ||||| ||| || || | Sbjct 250019 AAAATCAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTGGACTTCACG 249960 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||| ||||| | || | || || |||||||| || || Sbjct 249959 TTGTCAATGGTGTCAGAGGACTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTG 249900 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 249899 ACAAAGATCTGCAT 249886 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| || ||||| |||||| || || ||||| | | Sbjct 250535 GACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCGTCCTCCAGCTGCTTACCAGCA 250476 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| || || ||||| || ||||| ||| || || | Sbjct 250475 AAGATAAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGCTCTTCACG 250416 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||| || | ||||| || || | || | || || ||||| ||||| || Sbjct 250415 TTGTCAATGGTATCAGAAGACTCGACTTCAAGAGTGATGGTCTTTCCAGTGAGAGTCTTC 250356 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 250355 ACGAAGATCTGCAT 250342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496260135802800