Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06- 26] 365 sequences; 25,429,610 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq96 111 1e-19 seq24 111 1e-19 seq14 105 6e-18 >seq96 Length=85826 Score = 111 bits (122), Expect = 1e-19 Identities = 125/165 (76%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 126950 GTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATG 127009 ||||| ||| || ||||| || |||||| |||||| |||||||| || || || ||| Sbjct 59330 GTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATG 59389 Query 127010 CCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTC 127068 |||||||||||| ||| || ||||| |||| |||| ||||||| | |||||| || Sbjct 59390 CCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCGATCGTGTCCGAAGACTCGACCTC 59448 Query 127069 GACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | ||| | ||| || || || || || || || ||||||||||| Sbjct 59449 AAGGGTGATCGTCTTACCCGTAAGGGTCTTAACGAAAATCTGCAT 59493 >seq24 Length=264051 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || ||||| ||||| ||| | ||||| ||| || ||||| || ||| Sbjct 250082 GTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCA 250023 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | |||| |||||||| || ||||| || |||||||||||| ||| || ||| Sbjct 250022 GCGAAAATCAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTGGACTTC 249963 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| || | |||||| | ||| || || | ||| | || ||||| ||||| || Sbjct 249962 ACGTTG-TCAATGGTGTCAGAGGACTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGT 249904 Query 127096 TTTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 249903 CTTGACAAAGATCTGCAT 249886 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || || || |||||||| Sbjct 250340 CCACCACGGAGACGGAGAACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGAG 250281 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| || || ||| | ||||| |||||||| || || || Sbjct 250280 AGAGTACGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCCGGGGGG 250221 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| || ||||| | |||| ||| || | |||||| Sbjct 250220 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTATCTGACGACTCGACC 250161 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || ||||| ||||| || || || || |||||||| Sbjct 250160 TCAAGGGTAATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 250114 Score = 91.5 bits (100), Expect = 1e-13 Identities = 126/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||| ||||| ||| | |||||| ||| || ||||| |||||| Sbjct 249854 GTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGACCATCCTCAAGCTGCTTTCCA 249795 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | || | |||||||| || || || || |||||||||||| || || |||| Sbjct 249794 GCGAAAATAAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGAATCTTGGACTTG 249735 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089 | |||| || | ||||| | |||||| |||| ||| | || |||||||| Sbjct 249734 ACGTTG-TCAATAGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 249682 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || || || || || || ||||| || ||| Sbjct 250538 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCGTCCTCCAGCTGCTTACCA 250479 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | |||||||| ||||| || || |||||||||||| ||| || ||| Sbjct 250478 GCAAAGATAAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGCTCTTC 250419 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| || | ||| || | | ||||||||| | || | || || || || ||||| Sbjct 250418 ACGTTG-TCAATGGTATCAGAAGACTCGACTTCAAGAGTGATGGTCTTTCCAGTGAGAGT 250360 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 250359 CTTCACGAAGATCTGCAT 250342 >seq14 Length=289536 Score = 105 bits (116), Expect = 6e-18 Identities = 139/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || || ||||| ||| || ||||| || ||| Sbjct 256405 GTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCA 256346 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| |||||||| || ||||| || |||||||||||| ||| || |||| Sbjct 256345 GCGAAGATCAGGCGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTGGACTTG 256286 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| |||||||| |||||| || | ||| | || || || ||||| || Sbjct 256285 ACGTTG-TCGATGGTGTCCGAGGACTCGACCTCCAGGGTGATGGTCTTACCCGTCAGGGT 256227 Query 127096 TTTTACAAAA 127105 || || ||| Sbjct 256226 CTTGACGAAA 256217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475498630527600