Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06- 26] 365 sequences; 25,429,610 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq59 141 1e-28 seq38 109 7e-19 >seq59 Length=151500 Score = 141 bits (156), Expect = 1e-28 Identities = 837/1326 (63%), Gaps = 35/1326 (3%) Strand=Plus/Plus Query 115864 TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGC 115923 |||||||| |||||||| || | || | | | || ||||||| ||||| ||| Sbjct 86280 TTGACAACCTGGAACTCACCAGCCAACACACGGCGCTGGTAAATGTTGGAAGTGTAAGGC 86339 Query 115924 TCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATG 115983 || |||||||| |||||||||| || |||| || |||||||||||||| || |||| Sbjct 86340 TCGAAGCACTCGTTGTTACCCAGAATCTGGGACGTCGAGGCTGTGGGCATAGGGGCCAAA 86399 Query 115984 AGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGT--CGT 116041 |||||| |||||| | ||| | | | || | ||||| | | || ||||| | Sbjct 86400 AGAAGGGAGTTGCGAACACCGTGCTGCTTGATCTGGTCCTTCAAAGAGTTCCAGTCCCAC 86459 Query 116042 AGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCG 116101 || | | || | | | |||||||| || ||||| |||||||| || || | || | Sbjct 86460 AGGTCA-CTGGGGGT-AACATCCCACATGTCGAACTGAAGGATACCCTGAGAGACAGGAG 86517 Query 116102 ATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGG 116161 | ||||| | ||| || || || |||| || | ||| | ||||||||||| Sbjct 86518 AACCCTCGTAGGTCGAGTAGGGACCTTCAAGAATAGCAATATCGCACGACGCCTCGAGGG 86577 Query 116162 CTGCGTGATACATTGTCTCAAAAATGCGAGCATTCA-TTGCCTTGGCCTCGTCGGAATCA 116220 | ||||| || || |||||||| || | || | || | |||||| | || ||| Sbjct 86578 CAGCGTGGTAAATGGTCTCAAAGATCTGCTTGTTGAGCTGAC-GGGCCTCAGCAGACTCA 86636 Query 116221 AA---CGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATT 116277 || | | || || | | || |||| || ||||| || ||||| | || || Sbjct 86637 AAAGGCATGCGAAGGGCC---AGGAAGGCATCAGCCAGACCCTGAACACCAACACCGATG 86693 Query 116278 GGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CACGGGATAAAAATTCCTATCG 116334 ||||| || | ||| || || || || ||| ||||| || ||| ||| Sbjct 86694 GGGCGGTGGCGCATGTTGCTGTTACG---GGCCTCGATAACGGGGTAGTGGTTCACATCA 86750 Query 116335 ATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCA 116394 |||| | || | || || ||||| |||| || || ||||| | | | || Sbjct 86751 ATAATGCGGTTCAAGTTGCGAACAACGACCTTGGTGACATCGTGCAGCTTCTGGAAGTCG 86810 Query 116395 AAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACA 116454 | | | | | | ||| | |||||| || | || ||||| || ||||| Sbjct 86811 TAGGAGTTGTTGTTGTAGTCAACAAAGGCAGGAAGAGCAAGAGAAGCCAGGTTGCACACG 86870 Query 116455 GAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATG 116514 | |||||| | | |||||| || || || || || | || ||||| ||| Sbjct 86871 GCAACCTCATCGGGAGCGCAGTACTCGATGATCTCAGTGCAAAGGTTGGAACTGCGAATA 86930 Query 116515 GTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGC 116574 || |||| |||||| || || ||| ||| || ||||||||| ||||| | || Sbjct 86931 GTTCCCAGGTTCTTCTGGTTACTCTTGCGGTTGCAGTGATCCTTGTACAGCATGAAAGGG 86990 Query 116575 GTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGT 116633 | || ||||| || || | || | ||||| | ||| | | || | ||| | || Sbjct 86991 TTACCAGTCTCAGTCTGAGCCTCCAAGATAGCATACCACAGCTTCTG-GGCCTTAATGGT 87049 Query 116634 --GGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCC 116691 | || | | || ||||||| |||||||| || ||||| |||||||| || || || Sbjct 87050 CAGACG--GCCACGTCCCTCCTGTTCGTACTTGGTATAGAGAGCCTCAAATTCATC-GCC 87106 Query 116692 ACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTC 116750 | ||| || | || || || || | || || | ||||| ||| | || || Sbjct 87107 ATAGCAGTCAGCCAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTTGCCGTTCTT 87166 Query 116751 CTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCG 116810 |||||| ||||||||||| | || || ||||| | || ||| | ||| ||| || Sbjct 87167 CTCAACACGCTTCATGAACAAATCAGGAATCCACAAGGCAAGGAACAAATCGCGAGCACG 87226 Query 116811 AGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCA 116870 | || || | || || || || | || | || || | | ||| |||||||| Sbjct 87227 AATCTCCTCCTTACCGTGGTTCTTCCGGAGATCAAGGAACTCGAACACATCAGCGTGCCA 87286 Query 116871 CGGTTCCAGGTACACCGCGATTGACCCCTTGCGACG------ACCAGCCTGGTTTACATA 116924 ||| |||||||| | || | | || | |||| |||| |||| | || || Sbjct 87287 CGGCTCCAGGTAAATGGCAAAAGCACC---GGGACGCTTGTTACCACCCTGATCGACGTA 87343 Query 116925 CCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGT 116984 | || || ||| || || || | ||| |||| ||||| | || || || || Sbjct 87344 ACGAGCAGTATTGTTGAAGACACGCAACATGGGAACAATACCGTTCGAGGTACCGTTGGT 87403 Query 116985 CCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGC 117044 || ||| ||| | || | || | ||| | || | |||||| || || || Sbjct 87404 GCCAGCAATGTAAGAACCAGTAGCACGGATACGGTGTACGTTGAGACCAATGCCACCCGC 87463 Query 117045 CCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACC 117104 | ||| ||||| ||||| | |||| || | ||||| || ||||| ||| | Sbjct 87464 CATCTTGGAGATCATAGCGCAAGTCTTGAGGGTGTCATAGATACCTTCGATACTGTCCTC 87523 Query 117105 CTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAG 117164 ||| | | | | |||||| || | || ||| || ||||||||||||||||| Sbjct 87524 CTTCATGTCTACCAAGAAGCAAGAAGAAAGCTGGGGCTGGGGAGTACCAGCGTTGAAGAG 87583 Query 117165 GGTTGG 117170 ||| || Sbjct 87584 GGTAGG 87589 >seq38 Length=199572 Score = 109 bits (120), Expect = 7e-19 Identities = 522/818 (64%), Gaps = 25/818 (3%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| ||||| ||||||||||||||||| ||||| ||| ||||| ||| || ||||| Sbjct 77006 GTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTTTCCAT 76947 Query 127291 AAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGG 127345 ||| || || ||||| | ||| | || |||| | || | | || Sbjct 76946 AAAGTCGAAGGGGTTAGAAGCCTTG---TACACCTTGTCGTTGCCGAGAGCCACCAGA-- 76892 Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTC---TCAGAGTTCATACCGATG 127402 ||||| || | |||| |||| ||||| || | || | |||| ||||||||| | Sbjct 76891 AGACGGTCGGCGACGAACTCGATGTA---AGTCTTCATGAGGTCAGCGTTCATACCAAGA 76835 Query 127403 AGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACG 127462 || || || || || || | |||| ||||||| || | || || || | Sbjct 76834 AGAGCGCAGGGAAGAGCCTCAGTAAGGAACTCCTTCTCGATAACAACGGCATCAGTGATA 76775 Query 127463 ATGGCGTGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTT-GAAGAGTTCCACAGC 127521 ||| | || || | | | ||| | ||| | |||| ||| || || Sbjct 76774 ATGTCCTGGATCAACTGCTTGCTAGGGCGGTTGT-TCAAGTGAGAGAAAAGAAGGCAGGC 76716 Query 127522 AAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 127581 ||| || ||| |||||||| ||||||||||| || || || |||||| || ||| || Sbjct 76715 AAAGTCGGTGTGAAGACCCTCATCACGGGAGATCAGCTCGTTTGAGAAGGTCAAACCGGG 76656 Query 127582 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 127641 ||| | ||| ||||| || ||| || || | ||| | |||||||||||||| || Sbjct 76655 CATCATACCACGCTTGCGCAGCCAAAAGATAGAGGCAAAGGCACCAGAGAAGAAGATACC 76596 Query 127642 CTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGT-ATCAAACC 127700 ||| || || || |||| ||||||| |||||||| || | |||| || || Sbjct 76595 CTCAACGGCAGCAAAGGCAACCAGACGCTGGGCAAAGG-TCGACTCCTTGTCGGTAATCC 76537 Query 127701 ACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGA 127760 |||||| ||||| | ||||| ||| || || | ||| | || || | || | Sbjct 76536 ACTTCAGGGCCCAGTCGGCCTTGCGGCGGATGCAAGGAATGGTATCAATGGCGTTGAACA 76477 Query 127761 GTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGC 127820 | | | | | | || || |||||||| |||| || || || || || || Sbjct 76476 GGTACGTGCGCTGAGCAGGCTCCTTGATGTAGGTATCGATCAGGAGGGAGTACGTCTCCG 76417 Query 127821 CGTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGT 127879 ||| | | | ||| || ||| | |||| || |||| || ||| ||||| Sbjct 76416 AGTGAATGTTCTCCATCAT-AATCTGGAAACCGTAAAAGCAGCGGGCCTCGGGAATCTGC 76358 Query 127880 ACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAA 127939 ||||| | | ||| | | ||||| ||||| || || || |||| || Sbjct 76357 ACCTCGGCAGAGAAACGCTCGACCAAGTTCTCGTTGACAATACCGTCAGAGGCAGCGAAG 76298 Query 127940 AACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCG 127996 || || |||| | ||||| |||||||| || | ||| || | ||||||||| Sbjct 76297 AAGGCAAGGACGTGAGAGATGAAGAACTGTTCATCCTTGGTCATGCGGTTGTTCCAGTCG 76238 Query 127997 TCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 | |||||||| || | || | |||||| |||||||| Sbjct 76237 TGAAGATCCTTGGACAAGTCAATCTCCTCGGCAGTCCA 76200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613504400873400