Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06- 26] 365 sequences; 25,429,610 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq96 123 3e-23 seq24 120 3e-22 seq14 118 1e-21 >seq96 Length=85826 Score = 123 bits (136), Expect = 3e-23 Identities = 146/195 (75%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| |||||||| || || ||||| | || || ||||||||||| ||||| | Sbjct 59304 CCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 59363 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| |||||||||||| | || | || |||||||||| |||||| ||||| ||| | Sbjct 59364 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTG 59422 Query 46524 -CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| || || || || | ||||| || || ||||| || || ||||| Sbjct 59423 TCGATCGTGTCCGAAGACTCGACCTCAAGGGTGATCGTCTTACCCGTAAGGGTCTTAACG 59482 Query 46583 AAGATTTGCATTTTG 46597 || || ||||| ||| Sbjct 59483 AAAATCTGCATCTTG 59497 >seq24 Length=264051 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || ||||||||||| || ||||| | || || ||||||||||| ||||| Sbjct 250077 CTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAA 250018 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| ||||||||||| | || | | |||||||||| |||||| ||| | ||| Sbjct 250017 AATCAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTGGACTTCA-CGT 249959 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| || || || || | |||||||| ||||| ||||| || || | Sbjct 249958 TGTCAATGGTGTCAGAGGACTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGA 249899 Query 46581 CAAAGATTTGCAT 46593 ||||||| ||||| Sbjct 249898 CAAAGATCTGCAT 249886 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || || ||||| || | || || ||||||||||||||||| Sbjct 250305 CTCCTTCTGGATGTTGTAATCCGAGAGAGTACGGCCATCCTCAAGCTGCTTGCCGGCGAA 250246 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||||||||| | || | | |||||||||| |||||| ||||| | Sbjct 250245 AATCAAACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATT 250186 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | || || ||| || || || | || ||||| ||||| ||||| || || || Sbjct 250185 GTCGATGGTATCTGACGACTCGACCTCAAGGGTAATGGTCTTGCCAGTCAGGGTCTTGAC 250126 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 250125 GAAGATCTGCAT 250114 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || || || |||| || |||||||| || || || Sbjct 250533 CTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCGTCCTCCAGCTGCTTACCAGCAAA 250474 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||||| || | | |||||||||| |||||| |||| | ||| Sbjct 250473 GATAAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGCTCTTCA-CGT 250415 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | || || || || || || | |||||||| || || || || || || | Sbjct 250414 TGTCAATGGTATCAGAAGACTCGACTTCAAGAGTGATGGTCTTTCCAGTGAGAGTCTTCA 250355 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 250354 CGAAGATCTGCAT 250342 Score = 95.1 bits (104), Expect = 1e-14 Identities = 124/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || ||||||||||| || ||||| | || || |||||||| || ||||| Sbjct 249849 CTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAA 249790 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||| | || | | |||||||||| ||||| ||||| ||| Sbjct 249789 AATAAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGAATCTTGGACTTGA-CGT 249731 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569 | | | |||||| || || || || | |||||||| ||||| || Sbjct 249730 TGTCAATAGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 249682 >seq14 Length=289536 Score = 118 bits (130), Expect = 1e-21 Identities = 138/184 (75%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || ||||| | || || ||||||||||| ||||| Sbjct 256400 CTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAA 256341 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||||||| | || | | |||||||||| |||||| ||||| ||| Sbjct 256340 GATCAGGCGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 256282 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| || || || |||| |||||||| || |||||||| || || | Sbjct 256281 TGTCGATGGTGTCCGAGGACTCGACCTCCAGGGTGATGGTCTTACCCGTCAGGGTCTTGA 256222 Query 46581 CAAA 46584 | || Sbjct 256221 CGAA 256218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565235821099800