Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06-
26] 365 sequences; 25,429,610 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq38 237 2e-57
seq24 114 1e-20
seq14 111 2e-19
seq96 109 5e-19
>seq38
Length=199572
Score = 237 bits (262), Expect = 2e-57
Identities = 426/620 (69%), Gaps = 7/620 (1%)
Strand=Plus/Minus
Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953
||| ||||||||| || | ||||| || | ||| || || ||||| ||| |||||
Sbjct 76721 GCAGGCAAAGTCGGTGTGAAGACCCTCATCACGGGAGATCAGCTCGTTTGAGAAGGTCAA 76662
Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013
|||||||| | || || || |||||||| || | ||| || || || |||||
Sbjct 76661 ACCGGGCATCATACCACGCTTGCGCAGCCAAAAGATAGAGGCAAAGGCACCAGAGAAGAA 76602
Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGC 133073
|| ||||| ||||| || || || ||||| |||| | | || || | || ||| ||
Sbjct 76601 GATACCCTCAACGGCAGCAAAGGCAACCAGACGCTGGGCAAAGGTCGACTCCTTGTCGGT 76542
Query 133074 GATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTT 133133
||||| ||| ||||| |||||||| || ||| || || || || ||||||||
Sbjct 76541 AATCCACTTCAGGGCCCAGTCGGCCTTGCGGCGGATGCAAGGAATGGTATCAATGGCGTT 76482
Query 133134 CAACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATAC 133191
|||| | | | | || ||| | | |||||| ||||| ||| || |||
Sbjct 76481 GAACAG--GTACGTGCGCTGAGCAGGCTCCTTGATGTAGGTATCGATCAGGAGGGAGTAC 76424
Query 133192 ATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACC 133251
| |||||||| | ||||||||| || || || ||||||||||| || ||||||
Sbjct 76423 GTCTCCGAGTGAATGTTCTCCATCATAATCTGGAAACCGTAAAAGCAGCGGGCCTCGGGA 76364
Query 133252 ACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCG 133311
| |||||| || || |||||||||||||| || |||||||| || ||||| |||
Sbjct 76363 ATCTGCACCTCGGCAGAGAAACGCTCGACCAAGTTCTCGTTGACAATACCGTCAGAGGCA 76304
Query 133312 GCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCC 133368
||||| ||||| || ||||| |||||| | || | | | ||| ||| | |
Sbjct 76303 GCGAAGAAGGCAAGGACGTGAGAGATGAAGAACTGTTCATCCTTGGTCATGCGGTTGTTC 76244
Query 133369 CAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCT 133428
|||||| | |||||||||| ||| | ||||||| | ||||| || || ||||||||
Sbjct 76243 CAGTCGTGAAGATCCTTGGACAAGTCAATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCC 76184
Query 133429 TTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGG 133488
|| |||||||| ||| || || || | ||||| || | ||| || ||| ||||
Sbjct 76183 TTCTTGTACATTTGCCAGATCTCATGGTACTTGATGGGGAAGAGCACGAAGCGGTTGGGG 76124
Query 133489 TTTTCGCGCAACAGCGGCTC 133508
|| || ||| || |||||
Sbjct 76123 TTCTCTTGCAGGAGGGGCTC 76104
>seq24
Length=264051
Score = 114 bits (126), Expect = 1e-20
Identities = 142/192 (74%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || || || ||||| ||||||||| | || || ||| || |
Sbjct 249886 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGTCCTCT 249945
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || || |||| ||||| ||||| ||||| | |||||
Sbjct 249946 GACACCATTGACAACG-TGAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCA 250004
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || |||| ||| ||||| ||||| || || | ||||||||| |||||||||
Sbjct 250005 GCAGCGTCTGATTTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAA 250064
Query 38423 CATCCAAAAGGA 38434
||| || |||||
Sbjct 250065 CATTCAGAAGGA 250076
Score = 111 bits (122), Expect = 2e-19
Identities = 128/170 (75%), Gaps = 2/170 (1%)
Strand=Plus/Plus
Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324
|||| ||||| ||||||||| |||| |||||| || |||||| | | |||| | ||
Sbjct 249680 TCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCCGACACTATTGACAACG-TCAAG 249738
Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384
|| || | ||||| ||||| |||||| | ||||| ||||| || |||| ||| ||
Sbjct 249739 TCCAAGATTCAGGACAAGGAGGGTATTCCCCCGGACCAGCAGCGCCTTATTTTCGCTGGA 249798
Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434
|| ||||| || || | ||||||||| |||||||||||| || |||||
Sbjct 249799 AAGCAGCTTGAGGATGGTCGCACCCTCTCCGACTACAACATTCAGAAGGA 249848
Score = 109 bits (120), Expect = 5e-19
Identities = 165/231 (71%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| || || |||||||| | || |||||| | |
Sbjct 250342 ATGCAGATCTTCGTGAAGACTCTCACTGGAAAGACCATCACTCTTGAAGTCGAGTCTTCT 250401
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|| | | | | |||| | |||| || |||| ||||| ||||| || ||| ||||||
Sbjct 250402 GATACCATTGACAACG--TGAAGAGCAAGATCCAGGACAAGGAGGGTATCCCCCCCGACC 250459
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| ||||| || || | || || || |||||||| |||| || ||||| |||||||
Sbjct 250460 AGCAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAGGACGGCCGTACCCTGTCTGACTACA 250519
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472
||||||| ||||| | || || || |||| || ||| | | || ||||
Sbjct 250520 ACATCCAGAAGGAGTCCACTCTCCACCTGGTTCTCCGTCTTCGTGGTGGCC 250570
Score = 96.9 bits (106), Expect = 3e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || || ||||| ||||| ||| | || |||||| | |
Sbjct 250114 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATTACCCTTGAGGTCGAGTCGTCA 250173
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|| | | | | | | || || |||| ||||| ||||| || ||| | |||||
Sbjct 250174 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 250233
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| | |||| ||| ||||| ||||| || || | || || ||| || ||||||
Sbjct 250234 CAGCGTTTGATTTTCGCCGGCAAGCAGCTTGAGGATGGCCGTACTCTCTCGGATTACAAC 250293
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||||| ||||| | || || || ||||| || |||
Sbjct 250294 ATCCAGAAGGAGTCCACTCTTCACTTGGTTCTCCGT 250329
>seq14
Length=289536
Score = 111 bits (122), Expect = 2e-19
Identities = 151/208 (73%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || ||||| || ||||||||| | || |||||| || | |||| | |
Sbjct 256218 TTCGTCAAGACCCTGACGGGTAAGACCATCACCCTGGAGGTCGAGTCCTCGGACACCATC 256277
Query 38313 CA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371
| |||| | || || |||| ||||| ||||| ||||| | ||||| ||||| ||
Sbjct 256278 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAGCAGCGCCT 256336
Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431
|| | ||| ||||| ||||| || || | |||||||| |||||||||||||| ||
Sbjct 256337 GATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCGGACTACAACATCCAGAA 256396
Query 38432 GGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||| | || || || |||| || |||
Sbjct 256397 GGAGTCCACTCTCCACCTGGTCCTCCGT 256424
>seq96
Length=85826
Score = 109 bits (120), Expect = 5e-19
Identities = 142/194 (73%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || ||||| || || || ||||| || || |||||| | || |||||| |
Sbjct 59496 AAGATGCAGATTTTCGTTAAGACCCTTACGGGTAAGACGATCACCCTTGAGGTCGAGTCT 59437
Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359
| |||| | | |||| | || || |||| ||||| ||||| |||||| | ||
Sbjct 59436 TCGGACACGATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 59378
Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419
||| ||||| || || | ||| ||||| |||||||| || | |||||||| |||||
Sbjct 59377 CCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCTGACTA 59318
Query 38420 CAACATCCAAAAGG 38433
||||||||| ||||
Sbjct 59317 CAACATCCAGAAGG 59304
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500170517961600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |