Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06- 26] 365 sequences; 25,429,610 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq38 237 2e-57 seq24 114 1e-20 seq14 111 2e-19 seq96 109 5e-19 >seq38 Length=199572 Score = 237 bits (262), Expect = 2e-57 Identities = 426/620 (69%), Gaps = 7/620 (1%) Strand=Plus/Minus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||| ||||||||| || | ||||| || | ||| || || ||||| ||| ||||| Sbjct 76721 GCAGGCAAAGTCGGTGTGAAGACCCTCATCACGGGAGATCAGCTCGTTTGAGAAGGTCAA 76662 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 |||||||| | || || || |||||||| || | ||| || || || ||||| Sbjct 76661 ACCGGGCATCATACCACGCTTGCGCAGCCAAAAGATAGAGGCAAAGGCACCAGAGAAGAA 76602 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGC 133073 || ||||| ||||| || || || ||||| |||| | | || || | || ||| || Sbjct 76601 GATACCCTCAACGGCAGCAAAGGCAACCAGACGCTGGGCAAAGGTCGACTCCTTGTCGGT 76542 Query 133074 GATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTT 133133 ||||| ||| ||||| |||||||| || ||| || || || || |||||||| Sbjct 76541 AATCCACTTCAGGGCCCAGTCGGCCTTGCGGCGGATGCAAGGAATGGTATCAATGGCGTT 76482 Query 133134 CAACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATAC 133191 |||| | | | | || ||| | | |||||| ||||| ||| || ||| Sbjct 76481 GAACAG--GTACGTGCGCTGAGCAGGCTCCTTGATGTAGGTATCGATCAGGAGGGAGTAC 76424 Query 133192 ATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACC 133251 | |||||||| | ||||||||| || || || ||||||||||| || |||||| Sbjct 76423 GTCTCCGAGTGAATGTTCTCCATCATAATCTGGAAACCGTAAAAGCAGCGGGCCTCGGGA 76364 Query 133252 ACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCG 133311 | |||||| || || |||||||||||||| || |||||||| || ||||| ||| Sbjct 76363 ATCTGCACCTCGGCAGAGAAACGCTCGACCAAGTTCTCGTTGACAATACCGTCAGAGGCA 76304 Query 133312 GCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCC 133368 ||||| ||||| || ||||| |||||| | || | | | ||| ||| | | Sbjct 76303 GCGAAGAAGGCAAGGACGTGAGAGATGAAGAACTGTTCATCCTTGGTCATGCGGTTGTTC 76244 Query 133369 CAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCT 133428 |||||| | |||||||||| ||| | ||||||| | ||||| || || |||||||| Sbjct 76243 CAGTCGTGAAGATCCTTGGACAAGTCAATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCC 76184 Query 133429 TTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGG 133488 || |||||||| ||| || || || | ||||| || | ||| || ||| |||| Sbjct 76183 TTCTTGTACATTTGCCAGATCTCATGGTACTTGATGGGGAAGAGCACGAAGCGGTTGGGG 76124 Query 133489 TTTTCGCGCAACAGCGGCTC 133508 || || ||| || ||||| Sbjct 76123 TTCTCTTGCAGGAGGGGCTC 76104 >seq24 Length=264051 Score = 114 bits (126), Expect = 1e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || || ||| || | Sbjct 249886 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGTCCTCT 249945 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || || |||| ||||| ||||| ||||| | ||||| Sbjct 249946 GACACCATTGACAACG-TGAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCA 250004 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || |||| ||| ||||| ||||| || || | ||||||||| ||||||||| Sbjct 250005 GCAGCGTCTGATTTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAA 250064 Query 38423 CATCCAAAAGGA 38434 ||| || ||||| Sbjct 250065 CATTCAGAAGGA 250076 Score = 111 bits (122), Expect = 2e-19 Identities = 128/170 (75%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324 |||| ||||| ||||||||| |||| |||||| || |||||| | | |||| | || Sbjct 249680 TCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCCGACACTATTGACAACG-TCAAG 249738 Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384 || || | ||||| ||||| |||||| | ||||| ||||| || |||| ||| || Sbjct 249739 TCCAAGATTCAGGACAAGGAGGGTATTCCCCCGGACCAGCAGCGCCTTATTTTCGCTGGA 249798 Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 || ||||| || || | ||||||||| |||||||||||| || ||||| Sbjct 249799 AAGCAGCTTGAGGATGGTCGCACCCTCTCCGACTACAACATTCAGAAGGA 249848 Score = 109 bits (120), Expect = 5e-19 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || || |||||||| | || |||||| | | Sbjct 250342 ATGCAGATCTTCGTGAAGACTCTCACTGGAAAGACCATCACTCTTGAAGTCGAGTCTTCT 250401 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | | |||| | |||| || |||| ||||| ||||| || ||| |||||| Sbjct 250402 GATACCATTGACAACG--TGAAGAGCAAGATCCAGGACAAGGAGGGTATCCCCCCCGACC 250459 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | || || || |||||||| |||| || ||||| ||||||| Sbjct 250460 AGCAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAGGACGGCCGTACCCTGTCTGACTACA 250519 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 ||||||| ||||| | || || || |||| || ||| | | || |||| Sbjct 250520 ACATCCAGAAGGAGTCCACTCTCCACCTGGTTCTCCGTCTTCGTGGTGGCC 250570 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||| ||| | || |||||| | | Sbjct 250114 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATTACCCTTGAGGTCGAGTCGTCA 250173 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || || |||| ||||| ||||| || ||| | ||||| Sbjct 250174 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 250233 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | |||| ||| ||||| ||||| || || | || || ||| || |||||| Sbjct 250234 CAGCGTTTGATTTTCGCCGGCAAGCAGCTTGAGGATGGCCGTACTCTCTCGGATTACAAC 250293 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| ||||| | || || || ||||| || ||| Sbjct 250294 ATCCAGAAGGAGTCCACTCTTCACTTGGTTCTCCGT 250329 >seq14 Length=289536 Score = 111 bits (122), Expect = 2e-19 Identities = 151/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || ||||| || ||||||||| | || |||||| || | |||| | | Sbjct 256218 TTCGTCAAGACCCTGACGGGTAAGACCATCACCCTGGAGGTCGAGTCCTCGGACACCATC 256277 Query 38313 CA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371 | |||| | || || |||| ||||| ||||| ||||| | ||||| ||||| || Sbjct 256278 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAGCAGCGCCT 256336 Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431 || | ||| ||||| ||||| || || | |||||||| |||||||||||||| || Sbjct 256337 GATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCGGACTACAACATCCAGAA 256396 Query 38432 GGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| | || || || |||| || ||| Sbjct 256397 GGAGTCCACTCTCCACCTGGTCCTCCGT 256424 >seq96 Length=85826 Score = 109 bits (120), Expect = 5e-19 Identities = 142/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || || ||||| || || |||||| | || |||||| | Sbjct 59496 AAGATGCAGATTTTCGTTAAGACCCTTACGGGTAAGACGATCACCCTTGAGGTCGAGTCT 59437 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | |||| | || || |||| ||||| ||||| |||||| | || Sbjct 59436 TCGGACACGATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 59378 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| || || | ||| ||||| |||||||| || | |||||||| ||||| Sbjct 59377 CCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCTGACTA 59318 Query 38420 CAACATCCAAAAGG 38433 ||||||||| |||| Sbjct 59317 CAACATCCAGAAGG 59304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500170517961600