Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06- 26] 365 sequences; 25,429,610 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq24 138 3e-27 seq14 136 9e-27 >seq24 Length=264051 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| ||||| ||||| || ||||| ||||| |||| || || | ||||| || Sbjct 250094 ACAAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCA 250035 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||| || || || || ||||| |||||||| || || ||||| || Sbjct 250034 AGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGG 249975 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| ||||| ||||||||||| || || || |||||||| | ||||| Sbjct 249974 ATCTTGGACTTCACGTTGTCAATGGTGTCAGAGGACTCAACCTCAAGGGTGATGGTCTTG 249915 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || || || | ||||| Sbjct 249914 CCAGTCAGGGTCTTGACAAAGATCTGCAT 249886 Score = 136 bits (150), Expect = 9e-27 Identities = 141/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| |||||||| || ||||| ||||| |||| || || | ||||| || Sbjct 249866 ACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGACCATCCTCA 249807 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||| ||||| || || ||||| || ||||| || || ||||| ||| Sbjct 249806 AGCTGCTTTCCAGCGAAAATAAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGA 249747 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| ||||| ||||| || || || || ||||| | ||||| Sbjct 249746 ATCTTGGACTTGACGTTGTCAATAGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTG 249687 Query 195112 CCTGT 195116 || || Sbjct 249686 CCGGT 249682 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||| ||||||||||| || || || ||||| || | || || | || || || Sbjct 250551 AACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCGTCCTC 250492 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||||| || |||||||| || || ||||| || || || || || ||||| || Sbjct 250491 CAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTG 250432 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||| ||||| |||||||| || ||| || |||||||| || | ||||| Sbjct 250431 GATCTTGCTCTTCACGTTGTCAATGGTATCAGAAGACTCGACTTCAAGAGTGATGGTCTT 250372 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || | ||| || ||||| | ||||| Sbjct 250371 TCCAGTGAGAGTCTTCACGAAGATCTGCAT 250342 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||||||||||||||| || || || |||||||| | ||||| | ||||| || Sbjct 250323 AACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGAGAGAGTACGGCCATCCTC 250264 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || ||||| || | || || ||||| || || || || || ||||| || Sbjct 250263 AAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTG 250204 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || |||||| || || ||||| || || || || |||||||||| ||||| Sbjct 250203 GATCTTGGACTTGACATTGTCGATGGTATCTGACGACTCGACCTCAAGGGTAATGGTCTT 250144 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | ||||| Sbjct 250143 GCCAGTCAGGGTCTTGACGAAGATCTGCAT 250114 >seq14 Length=289536 Score = 136 bits (150), Expect = 9e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||||||||| || || || ||||| || | || || | ||||| || Sbjct 256417 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTCA 256358 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| |||||||| || || ||||| || Sbjct 256357 AGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGG 256298 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || ||||||||||| || || || ||||| | ||||| Sbjct 256297 ATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCCAGGGTGATGGTCTTA 256238 Query 195112 CCTGTCAAAGTTTTTACGAA 195131 || |||| || || ||||| Sbjct 256237 CCCGTCAGGGTCTTGACGAA 256218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109476411439955