Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06- 26] 365 sequences; 25,429,610 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq24 105 4e-18 seq96 93.3 3e-14 seq14 82.4 5e-11 >seq24 Length=264051 Score = 105 bits (116), Expect = 4e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||| ||| | ||| || ||||| ||||| ||||| || ||| | || | || || Sbjct 250551 AACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCGTCCTC 250492 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||| || || ||||| || || || |||||||| | || | ||||||||||| Sbjct 250491 CAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTG 250432 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| || ||| | || | ||| | ||| || || | || ||||| || Sbjct 250431 GATCTTGCTCTTCACGTTGTCAATGGTATCAGAAGACTCGACTTCAAGAGTGATGGTCTT 250372 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||| |||||||||||||| |||||||||||| Sbjct 250371 TCCAGTGAGAGTCTTCACGAAGATCTGCATA 250341 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| || ||| | || |||| || ||||| || || || || Sbjct 250076 TCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAA 250017 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| ||||| || ||| Sbjct 250016 ATCAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTGGACTTCACGTTG 249957 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| || |||||| || | ||| ||||| || || || || ||||| ||| Sbjct 249956 TCAATGGTGTCAGAGGACTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACA 249897 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 249896 AAGATCTGCATA 249885 Score = 93.3 bits (102), Expect = 3e-14 Identities = 151/216 (70%), Gaps = 10/216 (5%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| ||| || ||||| ||||| || ||||| || | || |||| || Sbjct 250323 AACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGAGAGAGTACGGCCATCCTC 250264 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || ||||| || || | || |||||||| | || | ||||||||||| Sbjct 250263 AAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTG 250204 Query 34892 AATCTTCTGTTTGAC-----GGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 ||||| ||||| |||| |||| | || | ||| || || | ||| ||| Sbjct 250203 GATCTTGGACTTGACATTGTCGATGGTATC---TGAC--GACTCGACCTCAAGGGTAATG 250149 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || || || ||||| || |||||||||||| Sbjct 250148 GTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATA 250113 Score = 86.0 bits (94), Expect = 4e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||| || ||||||||||| ||||| || ||| | || |||| || ||||| Sbjct 249861 GTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGACCATCCTCAAGCTG 249802 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 ||||| || || || || || |||||||| | || | ||||||||||| |||||| Sbjct 249801 CTTTCCAGCGAAAATAAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGAATCTT 249742 Query 34898 CTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGT 34957 |||||| | || | || || ||| || |||| ||| ||||| || || || Sbjct 249741 GGACTTGACGTTGTCAATAGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 249682 Query 34958 GA 34959 || Sbjct 249681 GA 249680 >seq96 Length=85826 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||| ||||| ||||| |||||| | || |||| |||||||| || || || || || Sbjct 59306 TTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 59365 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 || || |||||||| | || | ||||||||||| ||||| |||||| | Sbjct 59366 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 59425 Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAG 34973 |||| || | ||| || || | ||| || || || ||||| || ||||| || || Sbjct 59426 ATCGTGTCCGAAGACTCGACCTCAAGGGTGATCGTCTTACCCGTAAGGGTCTTAACGAAA 59485 Query 34974 ATCTGCATATT 34984 |||||||| || Sbjct 59486 ATCTGCATCTT 59496 >seq14 Length=289536 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| |||||||| ||| | || |||| || Sbjct 256417 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTCA 256358 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || || || |||||||| | || | ||||||||||| Sbjct 256357 AGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGG 256298 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | || || ||| || || | ||| ||||| || Sbjct 256297 ATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCCAGGGTGATGGTCTTA 256238 Query 34953 CCCGTGAGAGTCTTCACAAA 34972 ||||| || ||||| || || Sbjct 256237 CCCGTCAGGGTCTTGACGAA 256218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324632155887720