Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06- 26] 365 sequences; 25,429,610 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq59 150 2e-31 >seq59 Length=151500 Score = 150 bits (166), Expect = 2e-31 Identities = 465/715 (65%), Gaps = 22/715 (3%) Strand=Plus/Plus Query 48099 TCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCA 48158 || |||||||| || ||||| | |||||||||||| ||||| | | | | ||| Sbjct 87066 TCCTGTTCGTACTTGGTATAGAGAGCCTCAAATTCATCGCCATAGCAGTCAGCCAGGCCA 87125 Query 48159 GGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAAT 48218 || || || || || ||||| | | ||| | | | || | || | |||| || Sbjct 87126 GGGCACTCGTTGGGGCACATGAGAGTCCAGTTGCCGTTCTTCTCAACACGCTTCATGAAC 87185 Query 48219 ATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTA 48278 | ||| || ||||| | || | || ||||| | || | | || || || || Sbjct 87186 AAATCAGGAATCCACAAGGCAAGGAACAAATCGCGAGCACGAATCTCCTCCTTACCGTGG 87245 Query 48279 TTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCC 48338 ||| | || ||||| || || | | |||||| ||||| || || | || || || Sbjct 87246 TTCTTCCGGAGATCAAGGAACTCGAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCA 87305 Query 48339 ATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACT 48398 | |||| || || || ||||| || ||||| | || | ||||||||||| | || Sbjct 87306 AAAGCACCGGGACGCTTGTTACCACCCTGATCGACGTAACGAGCAGTATTGTTGAAGACA 87365 Query 48399 CTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTA 48458 | ||||| || |||||||| || || |||| ||||| || | ||| ||| ||| || Sbjct 87366 CGCAACATGGGAACAATACCGTTCGAGGTACCGTTGGTGCCAGCAATGTAAGAACCAGTA 87425 Query 48459 GCTCTTATA----TTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGC 48514 || | ||| ||| ||| | ||| || ||||| ||||| || || || | ||| Sbjct 87426 GCACGGATACGGTGTAC--GTTG--AGACCAATGCCACCCGCCATCTTGGAGATCATAGC 87481 Query 48515 ACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAA 48574 || || ||||| ||||| || ||||| ||||| || || |||| | || | || Sbjct 87482 GCAAGTCTTGAGGGTGTCATAGATACCTTCGATACTGTCCTCCTTCATGTCTACCAAGAA 87541 Query 48575 ACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAAT 48634 ||| ||| | || || || ||| || | || || | || |||||||||||| | Sbjct 87542 GCAAGAAGAAAGCTGGGGCTGGGGAGTACCAGCGTTGAAGAGGGTAGGAGATGCATGAGT 87601 Query 48635 AAACCA-TTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATAT------CCC 48687 || | || ||| || | | || || ||||| | |||| || | || ||| Sbjct 87602 GAAGAACTTGCTC-GACATGAGGTTGTAAGTTTCCAGAACACGCTCAACATTGTCACCCC 87660 Query 48688 ATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGT 48747 | ||||| | || ||||||||| | ||| | ||||| | |||||||| ||| Sbjct 87661 A------GATACCGACAGCTACACGCATAATCATGTGCTGAGGACGCTCAACAATCTTGC 87714 Query 48748 TATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA 48802 | | || | |||||| ||| ||||||| || || |||||||| || | ||| Sbjct 87715 CGTCAAGCTTGAGAAGATAGGATCTTTCCAAGGTCTTGAAACCAAAGTACTGGTA 87769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562106235378600