Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06- 26] 365 sequences; 25,429,610 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq59 215 6e-51 seq38 96.9 4e-15 seq17 91.5 2e-13 >seq59 Length=151500 Score = 215 bits (238), Expect = 6e-51 Identities = 943/1471 (64%), Gaps = 51/1471 (3%) Strand=Plus/Minus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGCATCCTCAT 75204 ||||||||| |||| ||| | || |||| | ||||||| ||| || |||| | | Sbjct 87763 TACTTTGGTTTCAAGACCTTGGA-AAGATCCTATCTTCTCAAGCTTGACGGCAAGATTGT 87705 Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264 || || ||| ||||| | ||||| || || |||| ||| || || | |||| Sbjct 87704 TGAGCGTCCTCAGCACATGATTATGCGTGTAGCTGTCGGTATCTGGGGTGACAATGTTGA 87645 Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCA 75322 ||| |||| || ||| || ||||| |||| | | ||| ||| ||| | || Sbjct 87644 GCGTGTTCTGGAAACTTACAACCTCATGTCGAGCAAGTTCT--TCACTCATGCATCTCCT 87587 Query 75323 ACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAAC 75382 ||||||||||| |||||||| || || ||| | || ||||||| | | | || Sbjct 87586 ACCCTCTTCAACGCTGGTACTCCCCAGCCCCAGCTTTCTTCTTGCTTCTTGGTAGACATG 87527 Query 75383 AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCAA 75440 ||||||||| ||| | |||||||||| || || | | | | ||||| | ||||| | Sbjct 87526 AAGGAGGACAGTATCGAAGGTATCTATGACACCCTCAAG-ACT-TGCGCTATGATCTCCA 87469 Query 75441 AGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTC 75500 || ||| || || ||||| | || | || | | | || | | ||| ||| Sbjct 87468 AGATGGCGGGTGGCATTGGTCTCAACGTACACCGTATCCGTGCTACTGGTTCTTACATTG 87409 Query 75501 GGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAG 75560 || || || ||| || | |||||| |||| ||| | || || || ||| || | Sbjct 87408 CTGGCACCAACGGTACCTCGAACGGTATTGTTCCCATGTTGCGTGTCTTCAACAATACTG 87349 Query 75561 CGCGCTATGTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGG 75614 | || || || |||| | || ||||| | || | | || | ||| ||| Sbjct 87348 CTCGTTACGTCGATCAGGGTGGTAACAAGCGTCCC---GGTGCTTTTGCCATTTACCTGG 87292 Query 75615 AACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAG 75674 | || ||||| || ||| | | ||||||||||| | || ||||| ||| | || | Sbjct 87291 AGCCGTGGCACGCTGATGTGTTCGAGTTCCTTGATCTCCGGAAGAACCACGGTAAGGAGG 87232 Query 75675 AGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGG 75734 || ||| | | ||| | || || |||||||||| || | ||||||||||| | Sbjct 87231 AGATTCGTGCTCGCGATTTGTTCCTTGCCTTGTGGATTCCTGATTTGTTCATGAAGCGTG 87172 Query 75735 TTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC- 75793 ||||| || || | ||| |||| | || || || || || || || | ||| Sbjct 87171 TTGAGAAGAACGGCAACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTGGCTGACT 87112 Query 75794 GCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAAT 75853 || ||| || || ||||| || ||||| || ||||| ||| ||||||| | | | Sbjct 87111 GCTATGGC-GATGAATTTGAGGCTCTCTATACCAAGTACGAACAGGAGGGACGTGGC--- 87056 Query 75854 GCGACTGTACCA----GCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGA 75908 || ||| |||| | | | || | | ||| | ||||| | | | ||||| |||| Sbjct 87055 -CGTCTG-ACCATTAAGGCCCAGAAGCTGTGGTATGCTATCTTGGAGGCTCAGACTGAGA 86998 Query 75909 CTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATT 75968 |||| | || | ||||| ||||||||| || ||| ||||||||||| ||||| Sbjct 86997 CTGGTAACCCTTTCATGCTGTACAAGGATCACTGCAACCGCAAGAGTAACCAGAAGAACC 86938 Query 75969 TGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATG 76028 ||||||| || || || || |||||||| || || | |||||| | | |||| Sbjct 86937 TGGGAACTATTCGCAGTTCCAACCTTTGCACTGAGATCATCGAGTACTGCGCTCCCGATG 86878 Query 76029 AGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTC 76088 || || || ||||| |||| || | || ||||| | ||| | | | | Sbjct 86877 AGGTTGCCGTGTGCAACCTGGCTTCTCTTGCTCTTCCTGCCTTTGTTGACTACAACAACA 86818 Query 76089 GCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACC 76148 | | | || | | || || || || |||| ||| | ||| || | |||| Sbjct 86817 ACTCCTACGACTTCCAGAAGCTGCACGATGTCACCAAGGTCGTTGTTCGCAACTTGAACC 86758 Query 76149 GAGTCATTGACAGAAATTTTTATCCCGTT---GAGACTGCGCGAAAGTCTAATATGCGAC 76205 | | ||||| || || |||||| ||| || || || || ||||| | Sbjct 86757 GCATTATTGATGTGAACCACTACCCCGTTATCGAG---GCCCGTAACAGCAACATGCGCC 86701 Query 76206 ACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACG 76265 || | || || ||| | |||||||| ||||| || |||| || | ||| || || Sbjct 86700 ACCGCCCCATCGGTGTTGGTGTTCAGGGTCTGGCTGATGCCTTCCTG----GCC-CTTCG 86646 Query 76266 CAT-----TTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTA 76320 ||| |||| || | ||| ||| || | || | |||||||| ||||| || Sbjct 86645 CATGCCTTTTGAGTCTGCTGAGGCCCGTCAGCTCAACAAGCAGATCTTTGAGACCATTTA 86586 Query 76321 TCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATT 76380 ||||| |||| |||||| || || | ||| ||||| |||| ||| | Sbjct 86585 CCACGCTGCCCTCGAGGCGTCGTGCGATATTGCTATTCTTGAAGGTCCCTACTCGACCTA 86526 Query 76381 TGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAA 76440 ||||||||||| | || || || | |||||||| || ||||||| | || | || | Sbjct 86525 CGAGGGTTCTCCTGTCTCTCAGGGTATCCTTCAGTTCGACATGTGGG-ATGTTACCCCCA 86467 Query 76441 GCTCAAC--TACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAAC 76498 | | | | | |||||| | | | ||||| | |||||| || | ||| |||| ||| Sbjct 86466 G-TGACCTGTGGGACTGGAACTCTTTGAAGGACCAGATCAAGCAGCACGGTGTTCGCAAC 86408 Query 76499 AGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAA 76558 ||| | |||| || ||||| |||||||| || | || || ||||||| || || Sbjct 86407 TCCCTTCTTTTGGCCCCTATGCCCACAGCCTCGACGTCCCAGATTCTGGGTAACAACGAG 86348 Query 76559 TGCTTTGAACCATACACAACAAACATCTACC 76589 ||||| || || ||||| | ||||| |||| Sbjct 86347 TGCTTCGAGCCTTACACTTCCAACATTTACC 86317 >seq38 Length=199572 Score = 96.9 bits (106), Expect = 4e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 65026 AAGGCGAAATGGGCAATGAAATGGTTTGAC-ACAAAGTCTCGCTCCTTCGCCGAGCGCCT 65084 ||||| | ||||| |||| ||| || | |||| | ||| |||| ||| |||| || Sbjct 76515 AAGGCCGACTGGGCCCTGAAGTGGATTACCGACAAGGAGTCGA-CCTTTGCCCAGCGTCT 76573 Query 65085 TTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTG 65144 |||| ||||| || ||||||||||||||||| || | || | |||| | ||| Sbjct 76574 GGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCTCTGGTGCCTTTGCCTCTATCTTTTG 76633 Query 65145 GTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGA 65204 | || ||||| ||| | ||||| || | ||||||||| || || || ||||| || Sbjct 76634 GCTGCGCAAGCGTGGTATGATGCCCGGTTTGACCTTCTCAAACGAGCTGATCTCCCGTGA 76693 Query 65205 TGAGGGTCTCCACCAGGAGTTTGCC 65229 ||||||||| ||| || |||||| Sbjct 76694 TGAGGGTCTTCACACCGACTTTGCC 76718 >seq17 Length=280677 Score = 91.5 bits (100), Expect = 2e-13 Identities = 199/291 (68%), Gaps = 8/291 (3%) Strand=Plus/Minus Query 13605 AGTGTACTCTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCT 13664 |||||||||| ||| | || || ||||| ||||| || | | || ||||| |||| Sbjct 146863 AGTGTACTCTGATTCTGACCGAAGGTGACTCGGCCAAGTCTTTGGCCGTTGCTGGTCGTG 146804 Query 13665 CTGTCGTTGGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGTAA-ATGTAAGAATGTT 13723 | | | | || ||| | | ||||| |||||||| || ||||| ||| || ||| Sbjct 146803 CCATTTTGGATCCTGACCGCATTGGTGTTTTCCCACTCCGTGGTAAGATGCTC-AACGTT 146745 Query 13724 CGGGACGCTTCGGTGGCACAGCTCACATCAAACCAGGAG-TTCAACGATCTCAAGAAGAT 13782 || || ||||| ||| ||| | || |||||||| ||||| || |||| || | Sbjct 146744 CGTGATGCTTCTTTGGACCAGATTACCAAGAACCAGGAAATTCAAA-ATATCAAACAGTT 146686 Query 13783 CCTTGGTCTTCA--ACAAGGAAAAGACTACCAAGATGTTTCTGAACTTCGCTATGGTCGT 13840 | | |||||| | |||||| | | ||| ||| | ||||| ||||||| | Sbjct 146685 CTTGGGTCTTAAGCACAAGGCA--GTTTACACGGATACCAAGGGGCTTCGTTATGGTCAT 146628 Query 13841 CTTATGATTATGACAGATGCCGATAATGATGGTTCTCACATCAAGGGTCTC 13891 || ||||| ||| | ||| ||| | |||||||| || |||||||||||| Sbjct 146627 CTGATGATCATGGCCGATCAGGATCACGATGGTTCGCATATCAAGGGTCTC 146577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596566878151200