Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06- 26] 365 sequences; 25,429,610 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq59 154 4e-32 seq38 118 3e-21 seq100 89.7 2e-12 seq37 86.0 2e-11 >seq59 Length=151500 Score = 154 bits (170), Expect = 4e-32 Identities = 594/926 (64%), Gaps = 13/926 (1%) Strand=Plus/Plus Query 155582 AAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAAT 155641 |||| ||| ||| ||||| || || || ||| ||| | | ||| ||| || | || Sbjct 86843 AAGAGCAAGAGAAGCCAGGTTGCACACGGCAACCTCATCGGGAGCGCAGTACTCGATGAT 86902 Query 155642 CTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTT 155701 |||| ||| ||||| ||||| || || || | |||||||||||| || | ||| Sbjct 86903 CTCAGTGCAAAGGTTGGAACTGCGAATAGTTCCCAGGTTCTTCTGGTTACTCTTGCGGTT 86962 Query 155702 ACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTT 155761 || ||||||||| || ||| | ||| | || ||||| |||| || |||| || Sbjct 86963 GCAGTGATCCTTGTACAGCATGAAAGGGTTACCAGTCTCAGTCTGAGCCTCCAAGATAGC 87022 Query 155762 TAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCAT 155821 ||| || | |||| ||||| | | | || ||| || || || | Sbjct 87023 ATACCACAGCTTCTGGGCCTTAATGGTCAGACGGCCACGTCCCTCCTGTTCGTACTTGGT 87082 Query 155822 ATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCA 155881 ||| || | | || || || || || ||| ||| |||||||||| | |||||| Sbjct 87083 ATAGAGAGCCTCAAATTCATCGCCATAGCAGTCAGCCAGGCCAGGGCACTCGTTGGGGCA 87142 Query 155882 AAACAGCGACCAAATT---TTATTACCGATTACACGCTCCATAAATACATCACTCGCCCA 155938 | || | ||| | || || | | |||||| ||| || | |||| ||| Sbjct 87143 CATGAGAGTCCAGTTGCCGTTCTTCTCAA---CACGCTTCATGAACAAATCAGGAATCCA 87199 Query 155939 AATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTC 155998 | ||| ||| | || | || |||||| | ||||| |||||||| || || Sbjct 87200 CAAGGCAAGGAACAAATCGCGAGCACGAATCTCCTCCTTACCGTGGTTCTTCCGGAGATC 87259 Query 155999 TAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCT 156058 | ||| || | ||||| || |||||||| || || |||||| ||| | Sbjct 87260 AAGGAACTCGAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACCGGGACG 87319 Query 156059 CTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAAT 156115 |||| ||||||||||| || || |||||||| || |||||||||| | ||| |||| Sbjct 87320 CTTGTTACCACCCTGATCGACGTAACGAGCAGTATTGTTGAAGACACGCAACATGGGAAC 87379 Query 156116 AATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATG 156175 |||||| || || || || ||||| || ||| | ||||||| | || | | || Sbjct 87380 AATACCGTTCGAGGTACCGTTGGTGCCAGCAATGTAAGAACCAGTAGCACGGATACGGTG 87439 Query 156176 AATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCATTCCTTTACAGTAT 156234 | | || ||||| ||||| | |||| || || || |||||| ||| | || | Sbjct 87440 TACGTTGAGACCAATGCCACCCG-CCATCTTGGAGATCATAGCGCAAGTCTTGAGGGTGT 87498 Query 156235 TGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAG 156294 | |||||||| ||| || || | ||| || | |||| ||| | || | Sbjct 87499 CATAGATACCTTCGATACTGTCCTCCTTCATGTCTACCAAGAAGCAAGAAGAAAGCTGGG 87558 Query 156295 GTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACA 156354 | | || || ||||||||||| || ||||| | ||||||| | || |||| | |||| Sbjct 87559 GCTGGGGAGTACCAGCGTTGAAGAGGGTAGGAGATGCATGAGTGAAGAACTTGCTCGACA 87618 Query 156355 TATAATCGTATGTCTCCTTAATCTTCTCAAGATT-AGACCCGTGAATACAGATAGAGACC 156413 | | ||| || ||| || ||||| ||| |||| | |||| || || || Sbjct 87619 TGAGGTTGTAAGTTTCCAGAACACGCTCAACATTGTCACCCCAG-ATACCGACAGCTACA 87677 Query 156414 CTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCG 156473 | ||| ||| |||||||||||||| |||||| || |||| ||||| || | Sbjct 87678 CGCATAATCATGTGCTGAGGACGCTCAACAATCTTGCCGTCAAGCTTGAGAAGATAGGAT 87737 Query 156474 CGTTCCAGAGTTTTAAACCCGAAATA 156499 | ||||| || || || || || || Sbjct 87738 CTTTCCAAGGTCTTGAAACCAAAGTA 87763 >seq38 Length=199572 Score = 118 bits (130), Expect = 3e-21 Identities = 343/523 (66%), Gaps = 4/523 (1%) Strand=Plus/Plus Query 133305 CCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACAT 133364 |||| ||||| |||||| || | |||||| |||||| || || || || || | Sbjct 76366 CCGAGGCCCGCTGCTTTTACGGTTTCCAGATTATGATGGAGAACATTCACTCGGAGACGT 76425 Query 133365 ATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAAC-TATTCAAC 133423 | || || || ||||| |||||||| || | | ||| |||| || | |||||| Sbjct 76426 ACTCCCTCCTGATCGATACCTACATCAAGGAGCCTGCTCAGC-GCACGTACCTGTTCAAC 76484 Query 133424 GCCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAG 133483 |||||| ||||||| || || | |||||||| | || ||||| Sbjct 76485 GCCATTGATACCATTCCTTGCATCCGCCGCAAGGCCGACTGGGCCCTGAAGTGGATTACC 76544 Query 133484 GACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAttttt 133543 |||||| ||| ||||| ||||| ||||| ||||||| || ||||| || || Sbjct 76545 GACAAGGAGTCGACCTTTGCCCAGCGTCTGGTTGCCTTTGCTGCCGTTGAGGGTATCTTC 76604 Query 133544 ttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTG 133603 ||| |||||| || |||||| |||||||| ||||||||||| | || || || Sbjct 76605 TTCTCTGGTGCCTTTGCCTCTATCTTTTGGCTGCGCAAGCGTGGTATGATGCCCGGTTTG 76664 Query 133604 TGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCCGTTTTA 133663 || || ||||| || || || | || |||| ||||||||||| |||||| | Sbjct 76665 ACCTTCTCAAACGAGCTGATCTCCCGTGATGAGGGTCTTCACACCGACTTTGCCTGCCTT 76724 Query 133664 CTTCACTCTAAATTAGAGCGACCACTC-AAAAAGAATAAGATTGAAGAAATTATTAGAGA 133722 ||| |||| | || || | ||| | | | ||| | ||| | || ||||| | || Sbjct 76725 CTTTTCTCTCACTT-GAACAACCGCCCTAGCAAGCAGTTGATCCAGGACATTATCACTGA 76783 Query 133723 AGCGGTTGAAATTGAGGTTGAATTTATCAATAGTGCTCTGCCGTGCCGTTTAATTGGTAT 133782 || |||| || ||| || || | | | ||||| || ||| | | ||||||| Sbjct 76784 TGCCGTTGTTATCGAGAAGGAGTTCCTTACTGAGGCTCTTCCCTGCGCTCTTCTTGGTAT 76843 Query 133783 GAATGATGTGCTGATGCAGCGTTATATTGAATTTGTAGCTGAC 133825 ||| | || || ||| || ||| || || || || || ||| Sbjct 76844 GAACGCTGACCTCATGAAGACTTACATCGAGTTCGTCGCCGAC 76886 >seq100 Length=82169 Score = 89.7 bits (98), Expect = 2e-12 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 233272 AGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATC 233328 ||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct 32764 AGCACCGTGGGCAATCATACAATCACGTTCCATTTCACCGAAACGCAGACCACCATC 32820 Score = 87.8 bits (96), Expect = 5e-12 Identities = 332/512 (65%), Gaps = 18/512 (4%) Strand=Plus/Plus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 |||||||| | ||||||||||||||| ||||||||||||||||| ||||||||||| | Sbjct 32765 GCACCGTGGGCAATCATACAATCACGTTCCATTTCACCGAAACGCAGACCACCATCTCTG 32824 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGT 251604 || | ||| || | ||||| | || | | | || |||||| | || || Sbjct 32825 GCACGACCTTCCACCGGCTGTCTGGTCATAATCTGCACCGGACCGCGAGCACGAGCGTGA 32884 Query 251605 TGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGA----T 251660 ||| || | |||||| || |||||||||||| ||| || || | ||| | | Sbjct 32885 ATCTTGTCGTCTACCATGTGACGAAGACGCTGGTAGTATGTAGGGCCAAAGAATACTTGT 32944 Query 251661 GCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTTCGTTTCCATTAGATTC 251720 |||| || || | ||||| | ||| |||| | | || ||| ||| | Sbjct 32945 GCTCTCAG---CTTAC-GACCAGTGTGGCCGTGGTACAAAGCCTCAAAACCACGAGACTG 33000 Query 251721 ATAACCAAGTT---TCTGTAGCTCTGAAGCAATATCACCAATCTTGAATTTGCTAAAACT 251777 ||||| ||| | | ||| | || | ||| || ||| | | || Sbjct 33001 GTAACCGTGTTGACGCAGCAGCGCAGAGACTGAATCGACA---GTGACATCAGTGAATGG 33057 Query 251778 GGTGCCGTCTCCGTAAAGACCCATTTGAATCAAC-ACTTTGCCTAAAAGTGTCTCTTTCA 251836 || | || || | | |||| || | | | || || | ||||| ||| ||| Sbjct 33058 CGTAGCATCACCCTCCATACCC-TTCAACGTAGCAACCTTACTCAAAAGACACTCAATCA 33116 Query 251837 GTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCA 251896 ||||| || ||||||||| ||||| || ||||| || |||||||| ||||| | | Sbjct 33117 AATGGGCAATCGTCATACGAGAAGGAATGGCGTGGGGGTTAATGATGATATCGGGAGTGA 33176 Query 251897 GTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGTTCCCTTT 251955 || ||| ||| || |||||||||| || || ||| | ||||| || ||||| Sbjct 33177 TACCCTCACGAGTAAAAGGCATATCCTCTT-GTCTGTAAGTAACACCAATGGTACCCTTC 33235 Query 251956 TGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 || |||||||| ||| ||||| |||||||| Sbjct 33236 TGCCCGTGACGGGAAGCAAACTTGTCACCAAT 33267 >seq37 Length=199617 Score = 86.0 bits (94), Expect = 2e-11 Identities = 109/149 (73%), Gaps = 6/149 (4%) Strand=Plus/Minus Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332 ||||||| ||||||| ||||||||||||||||||||| | ||| |||||||| || Sbjct 132350 GCACCGTAGGCAATCAAACAATCACGTTCCATTTCACCCAGACGGAGACCACCCTCGCGG 132291 Query 233333 GACCTACCCTGGACTGTT---TGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAA 233389 || | ||| | ||||| ||||| || || | | |||||| | |||| | Sbjct 132290 GAACGACCTT---CTGTTGGCTGACGGGTCAACGAGGCACGTGGACCGGTGGAACGAGAG 132234 Query 233390 TTAATTTTATCTTTAACCATATGCTTCAG 233418 | |||||||||| |||||| |||||||| Sbjct 132233 TGCATTTTATCTTGAACCATGTGCTTCAG 132205 Score = 84.2 bits (92), Expect = 6e-11 Identities = 116/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 251482 GATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCG 251541 || ||||||| | ||||| ||||||||| ||||||||||| | ||| |||||||| ||| Sbjct 132353 GAGGCACCGTAGGCAATCAAACAATCACGTTCCATTTCACCCAGACGGAGACCACCCTCG 132294 Query 251542 CGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCA-TAGGACCGATGGAGCGGCT 251600 || | | ||| || | |||||||| || | | | || |||||| |||| || Sbjct 132293 CGGGAACGACCTTCTGTTGGCTGACGGGTCA-ACGAGGCACGTGGACCGGTGGAACGAGA 132235 Query 251601 ATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAG 251640 || ||||| | ||||| ||||| ||||| |||||| Sbjct 132234 GTGCATTTTATCTTGAACCATGTGCTTCAGACGTTGGTAG 132195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471810716953005