Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06- 26] 365 sequences; 25,429,610 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq19 140 4e-27 seq83 125 9e-23 seq59 109 7e-18 seq38 105 8e-17 >seq19 Length=274706 Score = 140 bits (154), Expect = 4e-27 Identities = 95/107 (89%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| |||||||| | |||||||||||||| || || |||| |||||| |||| || ||| Sbjct 249995 GCCTCCAACTACTTGGACATCAAGCCTCTTCTTGACGTTGGATGCAAGACTGTCGCGAAC 250054 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292 ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 250055 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTCAACAT 250101 >seq83 Length=105398 Score = 125 bits (138), Expect = 9e-23 Identities = 265/396 (67%), Gaps = 6/396 (2%) Strand=Plus/Minus Query 18093 CACCTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTG 18152 || ||| || ||||| ||||| || ||| || ||||||||| || || || | Sbjct 14411 CAGCTTCGGTGAGTCCCACGGCAAGGCCGTTGGTGTCATCATCGAGAACGCCCCTCCCGG 14352 Query 18153 CATGCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGG 18212 | | || |||| ||||| |||||||| ||| | || ||||| || || ||| Sbjct 14351 CCTCGAGCTTACCGAAGCCGATATCCAGCCCCAGCTTACCCGTCGCCGCCCCGGTCAGTC 14292 Query 18213 CGCACTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAA 18272 ||| | |||| || ||||| ||| || ||||||| || | || || || ||| Sbjct 14291 CGCGATCACCACCCCTCGCAATGAGAAGGACCGCGTCACTATTCTCTCCGGTACCGAGTT 14232 Query 18273 CGGCCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGT 18332 ||||| ||| || || | || | | ||| || ||||| |||||||| ||| Sbjct 14231 CGGCCGCACCCTTGGTACCCCGATTGCCCTGACCGTTCCCAACGAGGACCAGCGCCCCAA 14172 Query 18333 CGACTATTCCGACATGTGCAAGG------TGCCGCGGCCCTCACACGCCGACTACACCTA 18386 ||||| | ||| | || || | || || || || |||||||| | ||| || Sbjct 14171 GGACTACGGCAACAAGACCATGGACCGCTTTCCCCGCCCATCGCACGCCGATTTCACTTA 14112 Query 18387 CATGGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGAC 18446 | || ||||||||||| ||||| || || || || ||||| || || ||||| ||||| Sbjct 14111 CCAGGAGAAGTACGGCATTAAGGCTTCTTCCGGTGGTGGCCGTTCCTCAGCCCGTGAGAC 14052 Query 18447 CCTCATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482 | | || || |||||||| || || |||||||| Sbjct 14051 CATTGCCCGTGTTGCCGCCGGTGCTGTTGCCGAGAA 14016 Score = 91.5 bits (100), Expect = 2e-12 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 19080 CGCAACGTGCCGGCAGGCCTCGGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCC 19139 ||||| ||||| | || ||||| ||||| ||| |||||| |||||||| |||||| Sbjct 13747 CGCAATGTGCCCTCCGGTCTCGGTGAGCCTGCCTTCGACAAGCTCGAGGCCATGCTCGCT 13688 Query 19140 CACGCCATGCTGTCGATCCCGGCCACCAAGGGATTCGAGATTGGCAGCGGGTTTGCGGGT 19199 ||||| ||| |||| || || |||| ||||| ||||||||||| ||| || || ||| Sbjct 13687 CACGCTATGATGTCTATTCCCGCCAGCAAGGCCTTCGAGATTGGTTCCGGTTTCGCCGGT 13628 >seq59 Length=151500 Score = 109 bits (120), Expect = 7e-18 Identities = 212/313 (68%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||| |||||||| || || || | ||| ||||| || | |||||| || | ||||| || Sbjct 87332 CTGATCGACGTAACGAGCAGTATTGTTGAAGACACGCAACATGGGAACAATACCGTTCGA 87391 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||||||||| || | ||| | || | || || | ||| || | || Sbjct 87392 GGTACCGTTGGTGCCAGCAATGTAAGAACCAGTAGCACGGATACGGTGTACGTTGAGACC 87451 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||||| || ||| ||||||||| | ||||| ||||| ||||| ||||| || || Sbjct 87452 AATGCCACCCGCCATCTTGGAGATCATAGCGCAAGTCTTGAGGGTGTCATAGATACCTTC 87511 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||| ||| |||||||||| || | ||||| || || || || || | || || Sbjct 87512 GATACTGTCCTCCTTCATGTCTACCAAGAAGCAAGAAGAAAGCTGGGGCTGGGGAGTACC 87571 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 ||||||||||| || || | || ||||| |||| | ||||||| || ||| || Sbjct 87572 AGCGTTGAAGAGGGTAGGAGATGCATGAGTGAAGAACTTGCTCGACATGAGGTTGTAAGT 87631 Query 1630365 GGCGAGCACGCGC 1630377 | || || ||| Sbjct 87632 TTCCAGAACACGC 87644 >seq38 Length=199572 Score = 105 bits (116), Expect = 8e-17 Identities = 215/317 (68%), Gaps = 3/317 (1%) Strand=Plus/Minus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 ||||||| |||||||| || |||||||| ||||||||| | |||| | | | Sbjct 76419 CCGAGTGAATGTTCTCCATCATAATCTGGAAACCGTAAAAGCAGCGGGCCTCGGGAATCT 76360 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | ||||| ||| || || ||| ||||||| || || ||||| ||| |||| Sbjct 76359 GCACCTCGGCAGAGAAACGCTCGACCAAGTTCTCGTTGACAATACCGTCAGAGGCAGCGA 76300 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA-GCGACAC--CCAGT 869807 | || || |||||||| ||| ||| | || || | | | | ||| ||||| Sbjct 76299 AGAAGGCAAGGACGTGAGAGATGAAGAACTGTTCATCCTTGGTCATGCGGTTGTTCCAGT 76240 Query 869808 GGACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTT 869867 | || | | ||| | ||||||||| ||||||| |||||||||||||| | Sbjct 76239 CGTGAAGATCCTTGGACAAGTCAATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTTCT 76180 Query 869868 TGTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGT 869927 ||||||| | ||| | | ||||| ||| |||||||| || |||||||||||||| | Sbjct 76179 TGTACATTTGCCAGATCTCATGGTACTTGATGGGGAAGAGCACGAAGCGGTTGGGGTTCT 76120 Query 869928 CGCGCAACAGGGGTTCG 869944 | ||| ||||| ||| Sbjct 76119 CTTGCAGGAGGGGCTCG 76103 Score = 104 bits (114), Expect = 3e-16 Identities = 165/235 (70%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || ||| |||||| |||||||||||||| |||| ||||| Sbjct 77014 GCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATG 76955 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 ||||| | ||| ||||| | | |||||| ||| ||| ||||| | | | Sbjct 76954 TTTTCCATAAAGTCGAAGGGGTTAGAAGCCTTGTACACCTTGTCGTTGCCGAGAGCCACC 76895 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCC--GA 868868 || || ||||||||||| ||||||||||| ||||||| | |||||||| || || Sbjct 76894 AGAAGACGGTCGGCGACGAACTCGATGTAAGTCTTCATGAGGTCAGCGTTCATACCAAGA 76835 Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTC 868923 |||||| || || | ||| | | ||||| |||||||| | ||||| || Sbjct 76834 AGAGCGC--AGGGAAGAGCCTCAGTAAGGAACTCCTTCTCGATAACAACGGCATC 76782 Score = 100 bits (110), Expect = 3e-15 Identities = 175/250 (70%), Gaps = 11/250 (4%) Strand=Plus/Minus Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278 |||||||| | || ||||| ||||||||||| | | || || ||||| ||| Sbjct 76660 CCGGGCATCATACCACGCTTGCGCAGCCAAAAGATAGAGGCAAAGGCACCAGAGAAGAAG 76601 Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338 || ||||| ||||| |||||| | | || |||| ||||||| ||||| ||||||| Sbjct 76600 ATACCCTCAACGGCAGCAAAGGCAACCAGACGCTGGGCAAAG--GTCGA----CTCCTTG 76547 Query 869339 T---TGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATG 869395 | | |||||||||| |||||||||||||| | | | || | || || ||| Sbjct 76546 TCGGTAATCCACTTCAGGGCCCAGTCGGCCTTGCGGCGGATGCAAGGAATGGTATCAATG 76487 Query 869396 GCGCGAAAGAGGT-GGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGA 869454 ||| || |||| || | | || || ||||||| ||||| ||||||||||| || Sbjct 76486 GCGTTGAACAGGTACGTGC-GCTGAGCAGGCTCCTTGATGTAGGTATCGATCAGGAGGGA 76428 Query 869455 ATAGGTCTCC 869464 || |||||| Sbjct 76427 GTACGTCTCC 76418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107109246390705