Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06-
26] 365 sequences; 25,429,610 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq19 140 4e-27
seq83 125 9e-23
seq59 109 7e-18
seq38 105 8e-17
>seq19
Length=274706
Score = 140 bits (154), Expect = 4e-27
Identities = 95/107 (89%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
||| |||||||| | |||||||||||||| || || |||| |||||| |||| || |||
Sbjct 249995 GCCTCCAACTACTTGGACATCAAGCCTCTTCTTGACGTTGGATGCAAGACTGTCGCGAAC 250054
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292
||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 250055 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTCAACAT 250101
>seq83
Length=105398
Score = 125 bits (138), Expect = 9e-23
Identities = 265/396 (67%), Gaps = 6/396 (2%)
Strand=Plus/Minus
Query 18093 CACCTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTG 18152
|| ||| || ||||| ||||| || ||| || ||||||||| || || || |
Sbjct 14411 CAGCTTCGGTGAGTCCCACGGCAAGGCCGTTGGTGTCATCATCGAGAACGCCCCTCCCGG 14352
Query 18153 CATGCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGG 18212
| | || |||| ||||| |||||||| ||| | || ||||| || || |||
Sbjct 14351 CCTCGAGCTTACCGAAGCCGATATCCAGCCCCAGCTTACCCGTCGCCGCCCCGGTCAGTC 14292
Query 18213 CGCACTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAA 18272
||| | |||| || ||||| ||| || ||||||| || | || || || |||
Sbjct 14291 CGCGATCACCACCCCTCGCAATGAGAAGGACCGCGTCACTATTCTCTCCGGTACCGAGTT 14232
Query 18273 CGGCCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGT 18332
||||| ||| || || | || | | ||| || ||||| |||||||| |||
Sbjct 14231 CGGCCGCACCCTTGGTACCCCGATTGCCCTGACCGTTCCCAACGAGGACCAGCGCCCCAA 14172
Query 18333 CGACTATTCCGACATGTGCAAGG------TGCCGCGGCCCTCACACGCCGACTACACCTA 18386
||||| | ||| | || || | || || || || |||||||| | ||| ||
Sbjct 14171 GGACTACGGCAACAAGACCATGGACCGCTTTCCCCGCCCATCGCACGCCGATTTCACTTA 14112
Query 18387 CATGGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGAC 18446
| || ||||||||||| ||||| || || || || ||||| || || ||||| |||||
Sbjct 14111 CCAGGAGAAGTACGGCATTAAGGCTTCTTCCGGTGGTGGCCGTTCCTCAGCCCGTGAGAC 14052
Query 18447 CCTCATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482
| | || || |||||||| || || ||||||||
Sbjct 14051 CATTGCCCGTGTTGCCGCCGGTGCTGTTGCCGAGAA 14016
Score = 91.5 bits (100), Expect = 2e-12
Identities = 92/120 (77%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 19080 CGCAACGTGCCGGCAGGCCTCGGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCC 19139
||||| ||||| | || ||||| ||||| ||| |||||| |||||||| ||||||
Sbjct 13747 CGCAATGTGCCCTCCGGTCTCGGTGAGCCTGCCTTCGACAAGCTCGAGGCCATGCTCGCT 13688
Query 19140 CACGCCATGCTGTCGATCCCGGCCACCAAGGGATTCGAGATTGGCAGCGGGTTTGCGGGT 19199
||||| ||| |||| || || |||| ||||| ||||||||||| ||| || || |||
Sbjct 13687 CACGCTATGATGTCTATTCCCGCCAGCAAGGCCTTCGAGATTGGTTCCGGTTTCGCCGGT 13628
>seq59
Length=151500
Score = 109 bits (120), Expect = 7e-18
Identities = 212/313 (68%), Gaps = 0/313 (0%)
Strand=Plus/Plus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
||| |||||||| || || || | ||| ||||| || | |||||| || | ||||| ||
Sbjct 87332 CTGATCGACGTAACGAGCAGTATTGTTGAAGACACGCAACATGGGAACAATACCGTTCGA 87391
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
||||||||||| || | ||| | || | || || | ||| || | ||
Sbjct 87392 GGTACCGTTGGTGCCAGCAATGTAAGAACCAGTAGCACGGATACGGTGTACGTTGAGACC 87451
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
||||| || ||| ||||||||| | ||||| ||||| ||||| ||||| || ||
Sbjct 87452 AATGCCACCCGCCATCTTGGAGATCATAGCGCAAGTCTTGAGGGTGTCATAGATACCTTC 87511
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
||| ||| |||||||||| || | ||||| || || || || || | || ||
Sbjct 87512 GATACTGTCCTCCTTCATGTCTACCAAGAAGCAAGAAGAAAGCTGGGGCTGGGGAGTACC 87571
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
||||||||||| || || | || ||||| |||| | ||||||| || ||| ||
Sbjct 87572 AGCGTTGAAGAGGGTAGGAGATGCATGAGTGAAGAACTTGCTCGACATGAGGTTGTAAGT 87631
Query 1630365 GGCGAGCACGCGC 1630377
| || || |||
Sbjct 87632 TTCCAGAACACGC 87644
>seq38
Length=199572
Score = 105 bits (116), Expect = 8e-17
Identities = 215/317 (68%), Gaps = 3/317 (1%)
Strand=Plus/Minus
Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690
||||||| |||||||| || |||||||| ||||||||| | |||| | | |
Sbjct 76419 CCGAGTGAATGTTCTCCATCATAATCTGGAAACCGTAAAAGCAGCGGGCCTCGGGAATCT 76360
Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750
| ||||| ||| || || ||| ||||||| || || ||||| ||| ||||
Sbjct 76359 GCACCTCGGCAGAGAAACGCTCGACCAAGTTCTCGTTGACAATACCGTCAGAGGCAGCGA 76300
Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA-GCGACAC--CCAGT 869807
| || || |||||||| ||| ||| | || || | | | | ||| |||||
Sbjct 76299 AGAAGGCAAGGACGTGAGAGATGAAGAACTGTTCATCCTTGGTCATGCGGTTGTTCCAGT 76240
Query 869808 GGACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTT 869867
| || | | ||| | ||||||||| ||||||| |||||||||||||| |
Sbjct 76239 CGTGAAGATCCTTGGACAAGTCAATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTTCT 76180
Query 869868 TGTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGT 869927
||||||| | ||| | | ||||| ||| |||||||| || |||||||||||||| |
Sbjct 76179 TGTACATTTGCCAGATCTCATGGTACTTGATGGGGAAGAGCACGAAGCGGTTGGGGTTCT 76120
Query 869928 CGCGCAACAGGGGTTCG 869944
| ||| ||||| |||
Sbjct 76119 CTTGCAGGAGGGGCTCG 76103
Score = 104 bits (114), Expect = 3e-16
Identities = 165/235 (70%), Gaps = 4/235 (2%)
Strand=Plus/Minus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || || || ||| |||||| |||||||||||||| |||| |||||
Sbjct 77014 GCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATG 76955
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
||||| | ||| ||||| | | |||||| ||| ||| ||||| | | |
Sbjct 76954 TTTTCCATAAAGTCGAAGGGGTTAGAAGCCTTGTACACCTTGTCGTTGCCGAGAGCCACC 76895
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCC--GA 868868
|| || ||||||||||| ||||||||||| ||||||| | |||||||| || ||
Sbjct 76894 AGAAGACGGTCGGCGACGAACTCGATGTAAGTCTTCATGAGGTCAGCGTTCATACCAAGA 76835
Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTC 868923
|||||| || || | ||| | | ||||| |||||||| | ||||| ||
Sbjct 76834 AGAGCGC--AGGGAAGAGCCTCAGTAAGGAACTCCTTCTCGATAACAACGGCATC 76782
Score = 100 bits (110), Expect = 3e-15
Identities = 175/250 (70%), Gaps = 11/250 (4%)
Strand=Plus/Minus
Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278
|||||||| | || ||||| ||||||||||| | | || || ||||| |||
Sbjct 76660 CCGGGCATCATACCACGCTTGCGCAGCCAAAAGATAGAGGCAAAGGCACCAGAGAAGAAG 76601
Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338
|| ||||| ||||| |||||| | | || |||| ||||||| ||||| |||||||
Sbjct 76600 ATACCCTCAACGGCAGCAAAGGCAACCAGACGCTGGGCAAAG--GTCGA----CTCCTTG 76547
Query 869339 T---TGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATG 869395
| | |||||||||| |||||||||||||| | | | || | || || |||
Sbjct 76546 TCGGTAATCCACTTCAGGGCCCAGTCGGCCTTGCGGCGGATGCAAGGAATGGTATCAATG 76487
Query 869396 GCGCGAAAGAGGT-GGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGA 869454
||| || |||| || | | || || ||||||| ||||| ||||||||||| ||
Sbjct 76486 GCGTTGAACAGGTACGTGC-GCTGAGCAGGCTCCTTGATGTAGGTATCGATCAGGAGGGA 76428
Query 869455 ATAGGTCTCC 869464
|| ||||||
Sbjct 76427 GTACGTCTCC 76418
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107109246390705
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |