Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06- 26] 365 sequences; 25,429,610 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq19 116 6e-20 seq38 105 1e-16 seq11 89.7 8e-12 seq80 87.8 3e-11 seq59 87.8 3e-11 >seq19 Length=274706 Score = 116 bits (128), Expect = 6e-20 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||| |||||||| | ||||||||||| || || || | || |||||||| || || ||| Sbjct 249995 GCCTCCAACTACTTGGACATCAAGCCTCTTCTTGACGTTGGATGCAAGACTGTCGCGAAC 250054 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACAT 2035753 | ||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 250055 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTCAACAT 250101 >seq38 Length=199572 Score = 105 bits (116), Expect = 1e-16 Identities = 94/118 (80%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 796299 GTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCG 796358 ||| | ||||||||| ||||| || |||||||||||||| |||||||| | ||| ||| Sbjct 76220 GTCAATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTGCCAGATCTC 76161 Query 796359 TTGGTAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTCG 796416 ||||| ||||||||| || || ||||| ||||||||||| | || || |||||| Sbjct 76160 ATGGTACTTGATGGGGAAGAGCACGAAGCGGTTGGGGTTCTCTTGCAGGAGGGGCTCG 76103 Score = 98.7 bits (108), Expect = 2e-14 Identities = 179/259 (69%), Gaps = 5/259 (2%) Strand=Plus/Minus Query 793892 GACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAG 793951 ||| || ||||| || || || || ||| |||||| |||||||||||||| |||| Sbjct 77021 GACACCAGCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAG 76962 Query 793952 CGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAG 794011 ||||| ||||| | ||| ||||| | | | ||| ||| ||| ||||| Sbjct 76961 GGAGATGTTTTCCATAAAGTCGAAGGGGTTAGAAGCCTTGTACACCTTGTCGTTGCCGAG 76902 Query 794012 CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCAT 794071 | | | || || |||||||||||||| || ||||| ||||||| | |||||||| Sbjct 76901 AGCCACCAGAAGACGGTCGGCGACGAACTCGATGTAAGTCTTCATGAGGTCAGCGTTCAT 76842 Query 794072 GCC--GATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129 || || |||||| ||| || | ||| | | ||||| |||||||| | ||||| Sbjct 76841 ACCAAGAAGAGCGC--AGGGAAGAGCCTCAGTAAGGAACTCCTTCTCGATAACAACGGCA 76784 Query 794130 TCGATGATGATCTGCCTGG 794148 || |||| || | ||||| Sbjct 76783 TCAGTGATAATGT-CCTGG 76766 >seq11 Length=365525 Score = 89.7 bits (98), Expect = 8e-12 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||| || |||||||||||||| |||||||||||| ||||||| || ||| | | Sbjct 14955 GTACTTGGTAACAGCCTTGGTACCCTCAGAGACGGCGTGCTTGGCCAGCTCACCGGGAAG 14896 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTC 1485557 ||| || || || | |||||| ||||| Sbjct 14895 GATGAGACGGACAGAGGTCTGAATCTC 14869 >seq80 Length=110433 Score = 87.8 bits (96), Expect = 3e-11 Identities = 145/209 (69%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 2411383 AGATCAATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGTCCTTGGTGAGGCCCGGC 2411442 |||||||||||||| || || || ||||||||||| | || ||| || || Sbjct 8930 AGATCAATCTTGGACTTGGGGTCAGAGGAACTCATCTTGCCACC---GGAGAGACCAGGA 8986 Query 2411443 ACCAGCGGGTTGAGCAGGTGGATGCGCTTGCGGTAGCCCAGCGCCGGCAGGTGGTCGCGC 2411502 |||| ||||| | || |||| ||| || | | || ||| |||| ||| | Sbjct 8987 ACCATGGGGTTCATCAAGTGGCAGCGGTTCTTGAAACCAAGCTTAGGCATAGCATCGTGA 9046 Query 2411503 GCAAAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGC 2411562 | | | ||||||||||||||||||| | || || |||| |||||| || |||||| | Sbjct 9047 GACAGGCCAAAGATCTTGCGCTGGTCAAGACCACCGAACTCGGCGTCAACACCGAGGTAC 9106 Query 2411563 TGCTCGTCGAGGGCCTGCATGAGCGGGTA 2411591 | ||| || || ||||||||| ||||| Sbjct 9107 TCCTCATCCAGAAGCTGCATGAGTGGGTA 9135 >seq59 Length=151500 Score = 87.8 bits (96), Expect = 3e-11 Identities = 174/258 (67%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||| ||||| || || || || | ||| ||||| || | |||||| |||| ||||| || Sbjct 87332 CTGATCGACGTAACGAGCAGTATTGTTGAAGACACGCAACATGGGAACAATACCGTTCGA 87391 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||||||||||| || | ||| | || | || || | ||| || | || Sbjct 87392 GGTACCGTTGGTGCCAGCAATGTAAGAACCAGTAGCACGGATACGGTGTACGTTGAGACC 87451 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||||| || ||| ||||||||| | ||||| | || || || || ||||| || || Sbjct 87452 AATGCCACCCGCCATCTTGGAGATCATAGCGCAAGTCTTGAGGGTGTCATAGATACCTTC 87511 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||| ||| |||||||||| | || ||||| || || || || | | || || Sbjct 87512 GATACTGTCCTCCTTCATGTCTACCAAGAAGCAAGAAGAAAGCTGGGGCTGGGGAGTACC 87571 Query 2073780 GGCATTGAAGAGCGTGGG 2073797 || |||||||| || || Sbjct 87572 AGCGTTGAAGAGGGTAGG 87589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916207573285235