Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06- 26] 365 sequences; 25,429,610 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq24 134 9e-27 seq14 132 3e-26 seq96 127 1e-24 >seq24 Length=264051 Score = 134 bits (148), Expect = 9e-27 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | || ||||||||||||||| ||||| || ||| |||| |||| Sbjct 250097 AGGACAAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCC 250038 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || ||||| ||||| || |||||||| | || | ||||||||||| Sbjct 250037 TCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCC 249978 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | ||| || ||| || |||| ||| |||||| Sbjct 249977 TGGATCTTGGACTTCACGTTGTCAATGGTGTCAGAGGACTCAACCTCAAGGGTGATGGTC 249918 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || |||||||| |||||||||||||| Sbjct 249917 TTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 249886 Score = 122 bits (134), Expect = 6e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | ||| ||||||||| ||||| ||||| || ||| | || | || Sbjct 250553 AGAACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCGTCC 250494 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || || ||||| || || |||||||| | || | ||||||||||| Sbjct 250493 TCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCC 250434 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | ||| | |||||| |||| || |||||| Sbjct 250433 TGGATCTTGCTCTTCACGTTGTCAATGGTATCAGAAGACTCGACTTCAAGAGTGATGGTC 250374 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||| ||||| || ||||||||||| Sbjct 250373 TTTCCAGTGAGAGTCTTCACGAAGATCTGCAT 250342 Score = 118 bits (130), Expect = 7e-22 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| |||| ||||||||||||||| ||||| || ||| |||| |||| Sbjct 249869 AGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGACCATCC 249810 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||| ||||| || || || |||||||| | || | ||||||||||| Sbjct 249809 TCAAGCTGCTTTCCAGCGAAAATAAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCC 249750 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || || |||||| || | ||| |||||| Sbjct 249749 TGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAGGACTCGACCTCGAGGGTGATGGTC 249690 Query 34946 TTTCCCGTGA 34955 || || |||| Sbjct 249689 TTGCCGGTGA 249680 Score = 118 bits (130), Expect = 7e-22 Identities = 157/216 (73%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| ||| ||||||||| ||||| || ||||| || | || |||| Sbjct 250325 AGAACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGAGAGAGTACGGCCATCC 250266 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| |||||||| |||| || |||||||| | || | ||||||||||| Sbjct 250265 TCAAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCC 250206 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| || | |||||| |||| ||| || Sbjct 250205 TGGATCTTGGACTTGAC--AT--TGTCGATGGTATCTGACGACTCGACCTCAAGGGTAAT 250150 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || || |||||||| || ||||||||||| Sbjct 250149 GGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 250114 >seq14 Length=289536 Score = 132 bits (146), Expect = 3e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | ||| ||||||||| ||||| |||||||| ||| |||| |||| Sbjct 256420 AGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCC 256361 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || ||||||||||| || |||||||| | || | ||||||||||| Sbjct 256360 TCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGAGGAATACCCTCCTTGTCC 256301 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || || |||||| || | ||| |||||| Sbjct 256300 TGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCCAGGGTGATGGTC 256241 Query 34946 TTTCCCGTGAGGGTCTTTACAAA 34968 || ||||| |||||||| || || Sbjct 256240 TTACCCGTCAGGGTCTTGACGAA 256218 >seq96 Length=85826 Score = 127 bits (140), Expect = 1e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| ||||| || ||| |||| |||| ||||| ||||| || ||||||| Sbjct 59304 CCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 59363 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 |||| || |||||||| | || | ||||||||||| | || || |||||| Sbjct 59364 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT 59423 Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 | |||| || | |||||| |||| ||| || ||||| ||||| |||||||| || | Sbjct 59424 CGATCGTGTCCGAAGACTCGACCTCAAGGGTGATCGTCTTACCCGTAAGGGTCTTAACGA 59483 Query 34968 AGATCTGCAT 34977 | |||||||| Sbjct 59484 AAATCTGCAT 59493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325691351175935