Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06- 26] 365 sequences; 25,429,610 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq59 167 2e-36 seq24 120 3e-22 seq14 111 2e-19 seq38 109 5e-19 seq96 104 2e-17 >seq59 Length=151500 Score = 167 bits (184), Expect = 2e-36 Identities = 742/1155 (64%), Gaps = 50/1155 (4%) Strand=Plus/Plus Query 148047 TTAAACGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGA--GT- 148103 || |||||||| ||| ||||| || || ||||| || || ||||||| || | || Sbjct 86067 TTCAACGACTGAGACTGATCAATAAAGGCACCACGATCGGCCGCCATTTGAACAACAGTG 86126 Query 148104 CGCTTTATCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCG 148163 |||| |||||||| ||||||||||||| |||||| | | | ||||||| | Sbjct 86127 CGCTGAGAA---ATCTCCCAAACCGTCTTGTACAGAGACTTGATGTCAGCAGGAATGCTG 86183 Query 148164 TCGATGCGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTAT 148223 |||| ||| | || ||| || | || || | || ||| | ||| | | Sbjct 86184 GGGATGTTCTGGATAGAACCGTTGTCGGAAATGATACGGTTCTTCATGTTGTCGGACCAC 86243 Query 148224 AGGTTGAGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCG 148283 || || || | ||||||| | || || | || || ||||| ||||| || || Sbjct 86244 AGACCAAGGTCAACCAGGTCACGAAGCAACCACGGGTTGACAACCTGGAACTCACCAGCC 86303 Query 148284 AGCACGCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAA 148343 | ||| || ||| | || | |||| || | || || || |||||||||| |||| | Sbjct 86304 AACACACGGCGCTGGTAAATGTTGGAAGTGTAAGGCTCGAAGCACTCGTTGTTACCCAGA 86363 Query 148344 ATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGA 148403 ||||| | |||| || |||||||| || | || || |||||||| | |||| | Sbjct 86364 ATCTGGGACGTCGAGGCTGTGGGCATAGGGGCCAAAAGAAGGGAGTTGCGAACACCGTGC 86423 Query 148404 TTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGAC--GGTGTCACGTTCC 148461 | || || | | ||||| || ||||||||| | || || || || || | || Sbjct 86424 TGCTTGATCTGGTCCTTCAAAGAGTTCCAGTCCCACA--GGTCACTGGGGGTAACATCCC 86481 Query 148462 ACATGTCGTACTGCAGAATGCCGCGGCTAG-CGGGGCTGCCCTCGTACGAGCTGTACGGT 148520 |||||||| |||| || || || | | || | || |||||||| | ||| || Sbjct 86482 ACATGTCGAACTGAAGGATACC-CTGAGAGACAGGAGAACCCTCGTAGGTCGAGTAGGGA 86540 Query 148521 CCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCA 148580 || | || | ||||| ||||||||| || ||| |||||| ||||| Sbjct 86541 CCTTCAAGAATAGCAATATCGCACGACGCCTCGAGGGCAGCGTGGTAAATGGTCTCAAAG 86600 Query 148581 ATTTGCCTGTTGAGCAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAAC 148640 || ||| |||||||| | ||| | || | ||||| || || || || Sbjct 86601 ATCTGCTTGTTGAGCTGACGGGCCTCAGCAGACTCAAAAGGCATGCGAAGGGCCAGGAAG 86660 Query 148641 GCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGC 148700 || || || || ||||| || || || || ||||| ||||| |||||| | || Sbjct 86661 GCATCAGCCAGACCCTGAACACCAACACCGATGGGGCGGTGGCGCATGTTGCTGTTACGG 86720 Query 148701 GCGCTCTCGAGC-GGATAGTGGTTGCGGTCGATGAT-CTTGTCAAGATTGCGCACCACCA 148758 || ||| | | || |||||||| || || || | ||||| ||||| || || | Sbjct 86721 GC-CTCGATAACGGGGTAGTGGTTCACATCAATAATGCGGTTCAAG-TTGCGAACAACGA 86778 Query 148759 CCTTTGTAATTCTGCGCAGCAATTCAAAATCGTA---------CTTGTCATCTAC-GATG 148808 |||| || | | ||||| | || ||||| |||| || || | | Sbjct 86779 CCTTGGTGACATCGTGCAGCTTCTGGAAGTCGTAGGAGTTGTTGTTGTAGTCAACAAAGG 86838 Query 148809 CATCGGTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTAC 148868 || || | || | ||| || || ||||||||||| |||||| || |||| |||| Sbjct 86839 CA--GG--AAGAGCAAGAGAAGCCAGGTTGCACACGGCAACCTCATCGGGAGCGCAGTAC 86894 Query 148869 TCTACGATCTCGGCGCACAGATTG---CTGC-ATTTGATCACGCCCACGTTCTTTTGATT 148924 || | |||||| | ||| || ||| |||| | | | | |||| |||||| || || Sbjct 86895 TCGATGATCTCAGTGCAAAGGTTGGAACTGCGAATAGTT----CCCAGGTTCTTCTGGTT 86950 Query 148925 GCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGT 148984 ||||||| |||||| ||||||||||||||| | || ||||| || ||| | Sbjct 86951 ACTCTTGCGGTTGCAGTGATCCTTGTACAGCATGAAAGGGTTACCAGTCTCAGTCTGAGC 87010 Query 148985 TTCCACTATGAACCGA-TGCAGGTCCTGCGCGCGCACTTGCTGCTC-----GTAGCGACC 149038 |||| || | | | ||| | ||| || ||| || || | || || Sbjct 87011 CTCCAAGAT-AGCATACCACAGCTTCTGGGC-----CTTAATGGTCAGACGGCCACGTCC 87064 Query 149039 CTCCTGCTCGTATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACC 149098 |||||| ||||| ||||| || ||| || | ||||| ||||| || | || || Sbjct 87065 CTCCTGTTCGTACTTGGTATAGAGAGCCTCAAATTCATCGCCATAGCAGTCAGCCAGGCC 87124 Query 149099 GGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAA 149158 ||||||| || ||||||||||| | ||| ||||| | | || |||||||| || Sbjct 87125 AGGGCACTCGTTGGGGCACATGAGAGTCCAGTTGCCGTTCTTCTCAACACGCTTCATGAA 87184 Query 149159 CAGATCGGGCACCCA 149173 || ||| || | ||| Sbjct 87185 CAAATCAGGAATCCA 87199 >seq24 Length=264051 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| ||| | ||| | | | ||||| ||||||||||| Sbjct 250082 GTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCA-TCCTCAAGCTGCTTGCC 250024 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| || ||||||||||| ||||| || || |||||||| |||||| ||| Sbjct 250023 AGCGAAAATCAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTGGACTT 249964 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| ||||| | || ||| || || | ||||| ||| ||||| ||||| || Sbjct 249963 CACGTTGTCAATGGTGTCAGAGGACTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGT 249904 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 249903 CTTGACAAAGATCTGCAT 249886 Score = 114 bits (126), Expect = 1e-20 Identities = 132/175 (75%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| | ||| ||| | ||||| |||||||| | Sbjct 249855 GGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGACCA-TCCTCAAGCTGCTTTC 249797 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| || ||||||||||| || || || || |||||||| ||||| || Sbjct 249796 CAGCGAAAATAAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGAATCTTGGACT 249737 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | |||| ||||||| || ||| || |||| ||||| ||| |||||||| Sbjct 249736 TGACGTTGTCAATAGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 249682 Score = 111 bits (122), Expect = 2e-19 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGCTGCTTGC 133521 |||||||| ||||| || |||||||| | | | | ||| ||||| |||||||||| Sbjct 250310 GTGGACTCCTTCTGGATGTTGTAATC--CGAGAGAGTACGGCCATCCTCAAGCTGCTTGC 250253 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| | ||||||||||| || ||||| || |||||||| |||||| || Sbjct 250252 CGGCGAAAATCAAACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGACT 250193 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | || || | | ||| || || | ||| | ||| ||||| ||||| | Sbjct 250192 TGACATTGTCGATGGTATCTGACGACTCGACCTCAAGGGTAATGGTCTTGCCAGTCAGGG 250133 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 250132 TCTTGACGAAGATCTGCAT 250114 Score = 102 bits (112), Expect = 8e-17 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 |||||||| ||||| || ||||| || || || ||| |||||| |||||||| | Sbjct 250538 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT--ACGGCCGTCCTCCAGCTGCTTAC 250481 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || || |||||||||||||| ||||| || |||||||| |||||| || Sbjct 250480 CAGCAAAGATAAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGCTCT 250421 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| || || | | ||| || || | |||| ||| || || || |||| Sbjct 250420 TCACGTTGTCAATGGTATCAGAAGACTCGACTTCAAGAGTGATGGTCTTTCCAGTGAGAG 250361 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 250360 TCTTCACGAAGATCTGCAT 250342 >seq14 Length=289536 Score = 111 bits (122), Expect = 2e-19 Identities = 140/190 (74%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| || || ||| | | | ||||| ||||||||||| Sbjct 256405 GTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCA-TCCTCAAGCTGCTTGCC 256347 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || ||||||||||| ||||| || || |||||||| |||||| ||| Sbjct 256346 AGCGAAGATCAGGCGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTGGACTT 256287 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||| | || ||| || || | ||||| ||| || || ||||| || Sbjct 256286 GACGTTGTCGATGGTGTCCGAGGACTCGACCTCCAGGGTGATGGTCTTACCCGTCAGGGT 256227 Query 133643 TTTTACGAAA 133652 || |||||| Sbjct 256226 CTTGACGAAA 256217 >seq38 Length=199572 Score = 109 bits (120), Expect = 5e-19 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699 ||||| |||||||| ||||| || ||||| || || || ||||||||||| || ||| Sbjct 76723 AGGCAGGCAAAGTCGGTGTGAAGACCCTCATCACGGGAGATCAGCTCGTTTGAGAAGGTC 76664 Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTG---ATGTAGAATATGGCGGCAAAGCTGCCCGAA 120756 | |||||||| || || || |||| | | || || | ||||||| || || Sbjct 76663 AAACCGGGCATCATACC--ACG-CTTGCGCAGCCAAAAGATAGAGGCAAAGGCACCAGAG 76607 Query 120757 AAGAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTG 120816 ||||| | ||||| ||| |||||||| |||| |||| ||| || |||| | |||| Sbjct 76606 AAGAAGATACCCTCAACGGCAGCAAAGGCAACCAGACGCTGGGCAAAGGTCGACTCCTTG 76547 Query 120817 CTGTCGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCAT 120866 | |||||||||| |||||| |||||||| ||| | ||| || || Sbjct 76546 TCGGTAATCCACTTCAGGGCCCAGTCGGCCTTGCGGCGGATGCAAGGAAT 76497 >seq96 Length=85826 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||||||||||| ||| | || || ||||||||||| || || ||||| |||||| Sbjct 59339 TCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 59398 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | || | |||||| | | ||| || || | ||||| Sbjct 59399 TCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCAAGGGTGATC 59458 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || || || || |||||||||||||| Sbjct 59459 GTCTTACCCGTAAGGGTCTTAACGAAAATCTGCAT 59493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483418594392600