Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06- 26] 365 sequences; 25,429,610 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq38 212 9e-49 seq59 123 4e-22 >seq38 Length=199572 Score = 212 bits (234), Expect = 9e-49 Identities = 399/572 (70%), Gaps = 26/572 (5%) Strand=Plus/Plus Query 1455715 CGAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCG 1455774 |||||| || |||| || ||||| |||||||| || || ||||||||| ||||| Sbjct 76103 CGAGCCCCTCCTGCAAGAGAACCCCAACCGCTTCGTGCTCTTCCCCATCAAGTACCATGA 76162 Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || |||||||||||||| || ||||| ||||||||| | ||| Sbjct 76163 GATCTGGCAAATGTAC-AAGAAGGCCGAGGCCTCTTTCTGGACTGCCGAGGAGATTGACT 76221 Query 1455835 TCGGCGCCGA----CACGGTCCACTGG--GTGTCGC-TGAGCGACGACGAGCGCCATTTC 1455887 | | || |||| ||||| ||| ||| | | || || | ||| Sbjct 76222 TGTCCAAGGATCTTCACG----ACTGGAACAACCGCATGACCAAGGATGAACAGTTCTTC 76277 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| |||||||| ||| || ||||| ||| || || || || ||||||| ||| Sbjct 76278 ATCTCTCACGTCCTTGCC-TTCTTCGCTGCCTCTGACGGTATTGTCAACGAGAACTTGGT 76336 Query 1455948 CGGCCGCTT-TATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGA 1456006 || || || | || ||||| || | || ||||| || | |||||||| ||||||| Sbjct 76337 CGAGCGTTTCTCTG-CCGAGGTGCAGATTCCCGAGGCCCGCTGCTTTTACGGTTTCCAGA 76395 Query 1456007 TCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGG 1456066 | || || ||||| ||||| || || ||||| ||||||||||| |||||| |||||| Sbjct 76396 TTATGATGGAGAACATTCACTCGGAGACGTACTCCCTCCTGATCGATACCTACATCAAGG 76455 Query 1456067 ACCCGGTCGAGAAGGAC-CACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAA 1456125 | || | || | || |||| || |||||| || || | || | | | Sbjct 76456 AGCCTGCTCAG-CGCACGTACCTGTTCAACGCCATTGATACCATTCCTTGCATCCGCCGC 76514 Query 1456126 AAGGCCGACTGGGCGATGAAGTGGAT---CAACAAGGAGGGCCTCGACACTTTGCCGAGC 1456182 |||||||||||||| |||||||||| | |||||||| ||||| ||||||| ||| Sbjct 76515 AAGGCCGACTGGGCCCTGAAGTGGATTACCGACAAGGAG----TCGAC-CTTTGCCCAGC 76569 Query 1456183 GGCTCGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCT 1456241 | || || | |||||| | ||| ||||| ||||| ||||| || || | | |||| Sbjct 76570 GTCTGGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCTCTGGTGCCTTTGCCTCTATCT 76629 Query 1456242 TTTGGCTCAAGAAGCGCGGCCTCATGCCCGGT 1456273 ||||||| ||||| || | ||||||||| Sbjct 76630 TTTGGCTGCGCAAGCGTGGTATGATGCCCGGT 76661 >seq59 Length=151500 Score = 123 bits (136), Expect = 4e-22 Identities = 205/291 (70%), Gaps = 4/291 (1%) Strand=Plus/Minus Query 259894 CATGTCGCAGCA-GTTGTTCACCTCA-GCGACGCCCACGCTCTTTAATGCCGGCACGCCG 259951 ||||||| |||| ||| ||||| ||| || | || || ||||| || || || || || Sbjct 87620 CATGTCG-AGCAAGTTCTTCAC-TCATGCATCTCCTACCCTCTTCAACGCTGGTACTCCC 87563 Query 259952 CGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATC 260011 | || ||| ||| || ||||| || | |||||||||| || ||||| || ||| Sbjct 87562 CAGCCCCAGCTTTCTTCTTGCTTCTTGGTAGACATGAAGGAGGACAGTATCGAAGGTATC 87503 Query 260012 TATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCC 260071 |||||||| |||||| ||||| | ||||||||| ||| || ||||| ||| | | Sbjct 87502 TATGACACCCTCAAGACTTGCGCTATGATCTCCAAGATGGCGGGTGGCATTGGTCTCAAC 87443 Query 260072 GCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGC 260131 | |||| | || || | || | ||| | || ||||||||||| || ||||| Sbjct 87442 GTACACCGTATCCGTGCTACTGGTTCTTACATTGCTGGCACCAACGGTACCTCGAACGGT 87383 Query 260132 CTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 |||| |||||| | || || || ||| | || || || |||||||| ||| Sbjct 87382 ATTGTTCCCATGTTGCGTGTCTTCAACAATACTGCTCGTTACGTCGATCAG 87332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177775995079130