Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06- 26] 365 sequences; 25,429,610 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq59 237 2e-57 seq17 95.1 2e-14 seq38 93.3 5e-14 >seq59 Length=151500 Score = 237 bits (262), Expect = 2e-57 Identities = 949/1471 (65%), Gaps = 51/1471 (3%) Strand=Plus/Plus Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 110765 |||| ||||| | ||||| || || ||||| || || ||||||| || || | || | Sbjct 86317 GGTAAATGTTGGAAGTGTAAGGCTCGAAGCACTCGTTGTTACCCAGAATCTGGGACGTCG 86376 Query 110766 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTT 110825 ||||||| ||||| || |||| | ||| ||| |||| ||| | || |||||| | | Sbjct 86377 AGGCTGTGGGCATAGGGGCCAAAAGAAGGGAGTTGCGAACACCGTGCTGCTTGATCTGGT 86436 Query 110826 CCTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTG 110883 |||| | | | |||||| | | | | || || | || | |||||||||| ||||| Sbjct 86437 CCTTCAAAGAGTTCCAGTCCCACAGGTCA-CTGGGGGTAACAT-CCCACATGTCGAACTG 86494 Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC 110943 ||| | || || || | ||||||||||| |||| |||| ||||| ||| Sbjct 86495 AAGGATACCCTGAGAGACAGGAGAACCCTCGTAGGTCGAGTAGGGACCTTCAAGAATAGC 86554 Query 110944 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003 | || || |||||| |||| ||||| || ||||| |||||||| | || | Sbjct 86555 AATATCGCACGACGCCTCGAGGGCAGCGTGGTAAATGGTCTCAAAGATCTGCTTGTTGAG 86614 Query 111004 CTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAAAATAAATACATCCGCG 111058 || ||| ||| | || ||||| |||| || | || || |||| || Sbjct 86615 CTGACGGGCCTCAGCAGACTCAAAAGGCATGCGAAGGGCCAGGAAGG-----CATCAGCC 86669 Query 111059 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC- 111117 ||||| |||||||| | ||| || || | ||| ||||| || || || || ||| Sbjct 86670 AGACCCTGAACACCAACACCGATGGGGCGGTGGCGCATGTTGCTGTTACGGGC---CTCG 86726 Query 111118 --AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTG 111175 |||||| || || ||||| | ||||| | || ||| | ||| ||| Sbjct 86727 ATAACGGGGTAGTGGTTCACATCAATAATGCGGTTCAAGTTGCGAACAACGACCTTGGTG 86786 Query 111176 ATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGG 111235 | || || || || | | || | | | | | | | ||| | ||||| Sbjct 86787 ACATCGTGCAGCTTCTGGAAGTCGTAGGAGTTGTTGTTGTAGTCAACAAAGGCAGGAAGA 86846 Query 111236 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 111295 || | || |||| ||||| || || |||||| | | |||||| | || || Sbjct 86847 GCAAGAGAAGCCAGGTTGCACACGGCAACCTCATCGGGAGCGCAGTACTCGATGATCTCA 86906 Query 111296 GTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCAC 111355 || || | ||||||||| ||| || |||| ||||| ||||||||||| |||||| Sbjct 86907 GTGCAAAGGTTGGAACTGCGAATAGTTCCCAGGTTCTTCTGGTTACTCTTGCGGTTGCAG 86966 Query 111356 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTC 111415 ||||||||| |||||| | || | || ||||| ||||| | | | ||||| | | Sbjct 86967 TGATCCTTGTACAGCATGAAAGGGTTACCAGTCTCAGTCTGAGCCTCCAAGATAGCATAC 87026 Query 111416 CA-AACATCGGCGGCTGGTACAATGG--CGTTGGCC-CGTCCCTCCGCCTCGTACTTTGT 111471 || | | || | | || ||||| | |||| ||||||||| |||||||| || Sbjct 87027 CACAGCTTCTGGGCCT----TAATGGTCAGACGGCCACGTCCCTCCTGTTCGTACTTGGT 87082 Query 111472 GTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGAC 111530 ||||| || ||||| || || ||| || ||| | || || || || || || | Sbjct 87083 ATAGAGAGCCTCAAATTCATC-GCCATAGCAGTCAGCCAGGCCAGGGCACTCGTTGGGGC 87141 Query 111531 AGAAAAGAGACCA-TTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCAC 111589 | | |||| ||| ||| | ||| |||||| ||||||||||| | || ||||||||| Sbjct 87142 ACATGAGAGTCCAGTTGCCGTTCTT-CTCAACACGCTTCATGAACAAATCAGGAATCCAC 87200 Query 111590 AGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCA 111649 | || || | ||| | | ||| ||| || | ||| ||||| || | ||| Sbjct 87201 AAGGCAAGGAACAAATCGCGAGCACGAATCTCCTCCTTACCGTGGTTCTTCCGGAGATCA 87260 Query 111650 AGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGA 111709 |||||||| | | ||| |||||||| ||||| || || | || | || || || Sbjct 87261 AGGAACTCGAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACC---GGGA 87317 Query 111710 CGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGA 111763 ||| ||| | |||| || || || || || ||| || || || | ||| ||| Sbjct 87318 CGCTTGTTACCACCCTGATCGACGTAACGAGCAGTATTGTTGAAGACACGCAACATGGGA 87377 Query 111764 ATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCA 111823 | |||||| | || ||| || || || ||| ||| | | || | | | Sbjct 87378 ACAATACCGTTCGAGGTACCGTTGGTGCCAGCAATGTAAGAACCAGTAGCACGGATACGG 87437 Query 111824 TGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCACACTCCGTAAGAG 111881 || | || | ||||| || || ||| ||| ||||| | ||||| | | | | || | Sbjct 87438 TGTACGTTGAGACCAATGCCACCCGCCATCTTGGAGATCATAGCGCA-AGT-CTTGAGGG 87495 Query 111882 TTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCT 111941 | |||||||||| | ||| ||||||||| || | | | ||||||| || | || Sbjct 87496 TGTCATAGATACCTTCGATACTGTCCTCCTTCATGTCTACCAAGAAGCAAGAAGAAAGCT 87555 Query 111942 GCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG-- 111999 | || || |||||||| ||||||||||| || | ||| ||| ||| | | |||| Sbjct 87556 GGGGCTGGGGAGTACCAGCGTTGAAGAGGGTAGGAGATGCATGAGTGA--AGAACTTGCT 87613 Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 ||||| || ||| || |||| ||| |||| | || || ||| |||| || Sbjct 87614 CGACATGAGGTTGTAAGTTTCCAGAACACGCTCAACATTGTCACCCCAGATACCGACAGC 87673 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA 112119 || ||||| | ||||| ||| || || | | |||| || ||| ||||||| Sbjct 87674 TACACGCATAATCATGTGCTGAGGACGCTCAACAATCTTGCCGTCAAGCTTGAGAAGATA 87733 Query 112120 -GCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149 | |||| || | ||| |||| ||||||||| Sbjct 87734 GGATCTT-TCCAAGGTCTTGAAACCAAAGTA 87763 >seq17 Length=280677 Score = 95.1 bits (104), Expect = 2e-14 Identities = 200/291 (69%), Gaps = 8/291 (3%) Strand=Plus/Plus Query 182516 GAGACCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACCATA 182575 |||||||||||| || |||||||| | ||| ||| | ||| ||||| ||| ||||||| Sbjct 146577 GAGACCCTTGATATGCGAACCATCGTGATCCTGATCGGCCATGATCATCAGATGACCATA 146636 Query 182576 GCGAAGTTCAGAAACATCTTGGTAGTCTTTTCCTTGT--TGAAGACCAAGGATCTTCTTG 182633 ||||| | ||| ||| | | |||||| | |||||| | || || ||| Sbjct 146637 ACGAAGCCCCTTGGTATCCGTGTAAAC--TGCCTTGTGCTTAAGACCCAAGAACTGTTTG 146694 Query 182634 AGATCATTGAA-CTCCTGGTTTGATGTAAGCTGTGCCACCGAAGCGTCCCGAACATTCTT 182692 | || ||||| |||||||| |||| ||| ||| ||||| || ||||| || Sbjct 146695 ATAT-TTTGAATTTCCTGGTTCTTGGTAATCTGGTCCAAAGAAGCATCACGAACGTT-GA 146752 Query 182693 ACAT-TTACCGCGAAGTGGGAACACACCGTAGTGATCACGACCAACGACAGAGAGACCCG 182751 ||| ||||| || |||||||| ||||| | | ||| || | | | | |||| | Sbjct 146753 GCATCTTACCACGGAGTGGGAAAACACCAATGCGGTCAGGATCCAAAATGGCACGACCAG 146812 Query 182752 CAACCGCGAGGGTTTTCGCCGAATCACCCTCCGTGACAATGAGAGTACACT 182802 |||| || | | || ||||| ||||| || || | ||| |||||||||| Sbjct 146813 CAACGGCCAAAGACTTGGCCGAGTCACCTTCGGTCAGAATCAGAGTACACT 146863 >seq38 Length=199572 Score = 93.3 bits (102), Expect = 5e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || ||| ||||||||||| ||||| || || || ||||||||| | ||| Sbjct 76718 GGCAAAGTCGGTGTGAAGACCCTCATCACGGGAGATCAGCTCGTTTGAGAAGGTCAAACC 76659 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||| | ||| ||||| || |||| | |||| | || | || ||||||||||| Sbjct 76658 GGGCATCATACCACGCTTGCGCAGCCAAAAGATAGAGGCAAAGGCACCAGAGAAGAAGAT 76599 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGG 122818 |||||| || ||||| |||| || || | ||| |||| Sbjct 76598 ACCCTCAACGGCAGCAAAGGCAACCAGACGCTGGGCAAAGG 76558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628029134604000