Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06- 26] 365 sequences; 25,429,610 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq59 149 8e-31 seq38 100 4e-16 seq17 100 4e-16 >seq59 Length=151500 Score = 149 bits (164), Expect = 8e-31 Identities = 945/1501 (63%), Gaps = 37/1501 (2%) Strand=Plus/Plus Query 118143 TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGC 118202 |||||||| |||||||| || | || | | | || || |||| ||||| ||| Sbjct 86280 TTGACAACCTGGAACTCACCAGCCAACACACGGCGCTGGTAAATGTTGGAAGTGTAAGGC 86339 Query 118203 TCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATG 118262 || |||||||| |||||||||| || |||| || |||||||||||||| || |||| Sbjct 86340 TCGAAGCACTCGTTGTTACCCAGAATCTGGGACGTCGAGGCTGTGGGCATAGGGGCCAAA 86399 Query 118263 AGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGT--CGT 118320 |||||| ||| || | ||| | | | | || | ||||| | || || ||||| | Sbjct 86400 AGAAGGGAGTTGCGAACACCGTGCTGCTTGATCTGGTCCTTCAAAGAGTTCCAGTCCCAC 86459 Query 118321 AGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCG 118380 || | | || | | | | |||||| || ||||| |||||||| || || | || | Sbjct 86460 AGGTCA-CTGGGGGT-AACATCCCACATGTCGAACTGAAGGATACCCTGAGAGACAGGAG 86517 Query 118381 ATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGG 118440 | ||||| | ||| || || || |||| || | ||| | ||||||||||| Sbjct 86518 AACCCTCGTAGGTCGAGTAGGGACCTTCAAGAATAGCAATATCGCACGACGCCTCGAGGG 86577 Query 118441 CTGCGTGATACATTGTTTCAAAAATGCGAGCATTCA-TTGCCTTGGCCTCGTCGGAATCA 118499 | ||||| || || || ||||| || | || | || | |||||| | || ||| Sbjct 86578 CAGCGTGGTAAATGGTCTCAAAGATCTGCTTGTTGAGCTGAC-GGGCCTCAGCAGACTCA 86636 Query 118500 AACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGG 118559 || | | || | || |||| || ||||| || ||||| | || || ||| Sbjct 86637 AAAGGCATGCGAAGGGCCAGGAAGGCATCAGCCAGACCCTGAACACCAACACCGATGGGG 86696 Query 118560 CGATGTCTCATATTAGACTTCCGAGCGGTCTC---CACGGGATAAAAATTCCTATCGATA 118616 || || | ||| || || || || ||| ||||| || ||| ||| ||| Sbjct 86697 CGGTGGCGCATGTTGCTGTTACG---GGCCTCGATAACGGGGTAGTGGTTCACATCAATA 86753 Query 118617 ACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAA 118676 | | || | || || ||||| |||| || || ||||| | | | || | Sbjct 86754 ATGCGGTTCAAGTTGCGAACAACGACCTTGGTGACATCGTGCAGCTTCTGGAAGTCGTAG 86813 Query 118677 CTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAG 118736 | | | | | ||| | |||||| || | || ||||| || ||||| | Sbjct 86814 GAGTTGTTGTTGTAGTCAACAAAGGCAGGAAGAGCAAGAGAAGCCAGGTTGCACACGGCA 86873 Query 118737 GTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTG 118796 |||||| | | |||||| || || || ||||| | ||| ||||| ||| || Sbjct 86874 ACCTCATCGGGAGCGCAGTACTCGATGATCTCAGTGCAAAGGTTGGAACTGCGAATAGTT 86933 Query 118797 CCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTC 118856 |||| |||||| || || ||| ||| || ||||||||| |||||| | || | Sbjct 86934 CCCAGGTTCTTCTGGTTACTCTTGCGGTTGCAGTGATCCTTGTACAGCATGAAAGGGTTA 86993 Query 118857 CCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTGG--CACAGTGG 118914 || ||||| || || | || | ||||| | ||| | || |||| | | ||| Sbjct 86994 CCAGTCTCAGTCTGAGCCTCCAAGATAGCATACCA-----CAGCTTCTGGGCCTTAATGG 87048 Query 118915 --CGTTGG-CTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCA 118971 | || | || ||||| | |||||||| || ||||| || ||||| || || || Sbjct 87049 TCAGACGGCCACGTCCCTCCTGTTCGTACTTGGTATAGAGAGCCTCAAATTCATCGCCAT 87108 Query 118972 CGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCT 119031 | || | || || || || | ||||| | ||||| ||| | || || || Sbjct 87109 AGCAGTCAGCCAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTTGCCGTTCTTCT 87168 Query 119032 CAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAG 119091 |||| ||||||||||| | || || ||||| | || ||| | ||| ||| ||| Sbjct 87169 CAACACGCTTCATGAACAAATCAGGAATCCACAAGGCAAGGAACAAATCGCGAGCACGAA 87228 Query 119092 CTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACG 119151 || || | || || || || | || | || || | | ||| |||||||||| Sbjct 87229 TCTCCTCCTTACCGTGGTTCTTCCGGAGATCAAGGAACTCGAACACATCAGCGTGCCACG 87288 Query 119152 GTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCG 119208 | |||||||| | || | | || ||| |||| |||| | || || | | Sbjct 87289 GCTCCAGGTAAATGGCAAAAGCACCGGGACGCTTGTTACCACCCTGATCGACGTAACGAG 87348 Query 119209 CAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCC 119268 |||| ||| || ||||| | ||| |||| ||||| | || || || || || Sbjct 87349 CAGTATTGTTGAAGACACGCAACATGGGAACAATACCGTTCGAGGTACCGTTGGTGCCAG 87408 Query 119269 GAATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACT 119328 ||| ||| | | || | || | ||| | || | |||||| || || ||| || Sbjct 87409 CAATGTAAGAACCAGTAGCACGGATACGGTGTACGTTGAGACCAATGCCACCCGCCATCT 87468 Query 119329 TTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTAT 119388 | ||||| ||||| | |||| || | ||||| || ||||| ||| |||| Sbjct 87469 TGGAGATCATAGCGCAAGTCTTGAGGGTGTCATAGATACCTTCGATACTGTCCTCCTTCA 87528 Query 119389 TTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTG 119448 | | | | |||||| || | || ||| ||| ||||||||||||||||| || | Sbjct 87529 TGTCTACCAAGAAGCAAGAAGAAAGCTGGGGCTGGGGAGTACCAGCGTTGAAGAGGGTAG 87588 Query 119449 GTGTCGCGTGGATGAACATACCTTG--GGACATCTTGTCGTAGGTCTCC--AAGACG-GC 119503 | | || || ||| | | |||| ||||| || ||| || ||| || ||| | Sbjct 87589 GAGATGCATGAGTGA--AGAACTTGCTCGACATGAGGTTGTAAGTTTCCAGAACACGCTC 87646 Query 119504 GGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTC 119563 | |||| ||| | ||||||| | || ||||||| ||||| || || || Sbjct 87647 AACATTGTCACCCCAG---ATACCGACAGCTACACGCATAATCATGTGCTGAGGACGCTC 87703 Query 119564 CATCAGGATACCATCGAGCCTCTGGAGGTA-ACTCTTCTCCAAGGTCTTGAGACCAAAAT 119622 | | | || || ||| | | || || |||| ||||||||||||| |||||| | Sbjct 87704 AACAATCTTGCCGTCAAGCTTGAGAAGATAGGATCTT-TCCAAGGTCTTGAAACCAAAGT 87762 Query 119623 A 119623 | Sbjct 87763 A 87763 >seq38 Length=199572 Score = 100 bits (110), Expect = 4e-16 Identities = 340/525 (65%), Gaps = 15/525 (3%) Strand=Plus/Minus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || ||| |||||||| ||||||||||| || || || |||||| || ||| Sbjct 76718 GGCAAAGTCGGTGTGAAGACCCTCATCACGGGAGATCAGCTCGTTTGAGAAGGTCAAACC 76659 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 ||||| | ||| ||||| || ||| || || | ||| | |||||||||||||| Sbjct 76658 GGGCATCATACCACGCTTGCGCAGCCAAAAGATAGAGGCAAAGGCACCAGAGAAGAAGAT 76599 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGT-ATCAA 130193 ||||| || || || |||| ||||||| ||||||| || | |||| || Sbjct 76598 ACCCTCAACGGCAGCAAAGGCAACCAGACGCTGGGCAAAGG-TCGACTCCTTGTCGGTAA 76540 Query 130194 ACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAA 130253 |||||||| ||||| | ||||| ||| || || | ||| | || || | | Sbjct 76539 TCCACTTCAGGGCCCAGTCGGCCTTGCGGCGGATGCAAGGAATGGTATCAATGGCGTTGA 76480 Query 130254 AGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTT 130313 | || | | | | | || || |||||||| |||| || || || || || | Sbjct 76479 ACAGGTACGTGCGCTGAGCAGGCTCCTTGATGTAGGTATCGATCAGGAGGGAGTACGTCT 76420 Query 130314 CGCCATGGACCATT-----TCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCT 130368 | | | || || |||| || ||| | |||| || |||| || ||| Sbjct 76419 C-CGAGTGAATGTTCTCCATCATAAT----CTGGAAACCGTAAAAGCAGCGGGCCTCGGG 76365 Query 130369 TATCTGTACCTCATCTGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCC 130428 ||||| ||||| | | ||| | | ||||| ||||| || || || | Sbjct 76364 AATCTGCACCTCGGCAGAGAAACGCTCGACCAAGTTCTCGTTGACAATACCGTCAGAGGC 76305 Query 130429 AGCAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTT 130485 ||| || || || |||| | ||||| |||||||| || | ||| || | || Sbjct 76304 AGCGAAGAAGGCAAGGACGTGAGAGATGAAGAACTGTTCATCCTTGGTCATGCGGTTGTT 76245 Query 130486 CCAGTCGTCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530 |||||||| ||||||||| || | || | |||||| |||||||| Sbjct 76244 CCAGTCGTGAAGATCCTTGGACAAGTCAATCTCCTCGGCAGTCCA 76200 >seq17 Length=280677 Score = 100 bits (110), Expect = 4e-16 Identities = 208/302 (69%), Gaps = 12/302 (4%) Strand=Plus/Plus Query 179766 ATTGAGGATGAGACCCTTAATGTGTGAACCATCGTTATCCGCATCCGTCATAATCATAAG 179825 ||||| | ||||||||| || || |||||||||| |||| ||| | ||| ||||| || Sbjct 146568 ATTGATCAAGAGACCCTTGATATGCGAACCATCGTGATCCTGATCGGCCATGATCATCAG 146627 Query 179826 CCGACCATAGCGAAGCTC---GGAAACATCTTGATAATCCTTACCTTGT--TGAAGACCC 179880 ||||||| |||||| | || | | | || ||| | | |||||| | ||||||| Sbjct 146628 ATGACCATAACGAAGCCCCTTGGTATC--CGTG-TAAAC--TGCCTTGTGCTTAAGACCC 146682 Query 179881 AAGATCTTCTTGAGATCATTGAA-CTCTTGGTTTGATGTGAGTTGCGCCACTGAAGCATC 179939 |||| || |||| || ||||| || ||||| || | || ||| |||||||| Sbjct 146683 AAGAACTGTTTGATAT-TTTGAATTTCCTGGTTCTTGGTAATCTGGTCCAAAGAAGCATC 146741 Query 179940 TCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACCAACCAC 179999 || || || ||| |||||||| ||||| ||||| | | ||| || | | | Sbjct 146742 ACGAACGTTGAGCATCTTACCACGGAGTGGGAAAACACCAATGCGGTCAGGATCCAAAAT 146801 Query 180000 AGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACA 180059 | |||||||||| || | | ||| || || ||||| || |||| || || ||||| Sbjct 146802 GGCACGACCAGCAACGGCCAAAGACTTGGCCGAGTCACCTTCGGTCAGAATCAGAGTACA 146861 Query 180060 CT 180061 || Sbjct 146862 CT 146863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618432378389400