Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06- 26] 365 sequences; 25,429,610 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq59 239 5e-58 seq38 111 2e-19 >seq59 Length=151500 Score = 239 bits (264), Expect = 5e-58 Identities = 909/1401 (65%), Gaps = 47/1401 (3%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACA---TTGATTCT 104278 || ||| ||||| | ||||| || || ||||||| ||||| |||| |||| | Sbjct 87697 CCTCAGCACATGATTATGCGTGTAGCTGTCGGTATC--TGGGGT-GACAATGTTGAGCGT 87641 Query 104279 GTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCC 104336 || |||| || ||| || ||||| |||| | | ||| ||| ||| | || |||| Sbjct 87640 GTTCTGGAAACTTACAACCTCATGTCGAGCAAGTTCT--TCACTCATGCATCTCCTACCC 87583 Query 104337 TCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGG 104396 ||||||| |||||||| || ||||| | || ||||||| | | | || |||| Sbjct 87582 TCTTCAACGCTGGTACTCCCCAGCCCCAGCTTTCTTCTTGCTTCTTGGTAGACATGAAGG 87523 Query 104397 AGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCAAAGTG 104454 ||||| ||| | |||||||||| || || | | | | ||||| | ||||| ||| Sbjct 87522 AGGACAGTATCGAAGGTATCTATGACACCCTCAAG-ACT-TGCGCTATGATCTCCAAGAT 87465 Query 104455 GGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGG 104514 ||| || || ||||| | || | || | | | || | | ||| ||| || Sbjct 87464 GGCGGGTGGCATTGGTCTCAACGTACACCGTATCCGTGCTACTGGTTCTTACATTGCTGG 87405 Query 104515 GACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCG 104574 || || ||| || | |||||| |||| ||| | || || || ||| || || || Sbjct 87404 CACCAACGGTACCTCGAACGGTATTGTTCCCATGTTGCGTGTCTTCAACAATACTGCTCG 87345 Query 104575 CTATGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCC 104628 || || |||| | ||| ||||| || || | || | || || ||||| Sbjct 87344 TTACGTCGATCAGGGTGGTAACAAGCGTCCC---GGTGCTTTTGCCATTTACCTGGAGCC 87288 Query 104629 ATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGC 104688 |||||||| ||| | | ||||||||||| | || ||||| ||| | |||||| Sbjct 87287 GTGGCACGCTGATGTGTTCGAGTTCCTTGATCTCCGGAAGAACCACGGTAAGGAGGAGAT 87228 Query 104689 GCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTG 104747 | |||| |||||| | ||| || | |||||||| ||| | ||||||||| | |||| Sbjct 87227 TC-GTGCTCGCGATTTGTTCCTTGCCTTGTGGATTCCTGATTTGTTCATGAAGCGTGTTG 87169 Query 104748 AGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCC 104806 || ||| ||||| ||| ||||| | || || || || ||||| || | || ||| Sbjct 87168 AGAAGAACGGCAACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTGGCTGACTGCT 87109 Query 104807 GTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTC--GGGCGACTG 104864 | || || || ||||| || || || || |||||||| | || || | || || || Sbjct 87108 AT-GGCGATGAATTTGAGGCTCTCTATACCAAGTACGAACAGGAGGGACGTGGCCGTCT- 87051 Query 104865 CGACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGT 104923 ||| | || | || | ||||| | ||||| | || |||| || ||||||||| Sbjct 87050 -GACCAT-TAAGGCCCAGAAGCTGTGGTATGCTATCTTGGAGGCTCAGACTGAGACTGGT 86993 Query 104924 ACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGT 104983 | || | |||||| ||||| || ||| |||| |||||||| || ||||| |||| Sbjct 86992 AACCCTTTCATGCTGTACAAGGATCACTGCAACCGCAAGAGTAACCAGAAGAACCTGGGA 86933 Query 104984 GTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACG 105043 || |||||||| || || || || ||| | || | | |||||| Sbjct 86932 ACTATTCGCAGTTCCAACCTTTGCACTGAGATCATCGAGTACTGCGCTCCCGATGAGGTT 86873 Query 105044 GCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGAC 105102 || ||||| ||||| || || | ||||| || | ||| || | || | | || | Sbjct 86872 GCCGTGTGCAACCTGGCTTCTCTTGCTCTTCCTGCCTTTGTTGACTACA-ACAACAACTC 86814 Query 105103 ATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGT 105162 | || | | || || ||||| || || || || ||| | ||| | | Sbjct 86813 CTACGACTTCCAGAAGCTGCACGATGTCACCAAGGTCGTTGTTCGCAACTTGAACCGCAT 86754 Query 105163 TATTGATAGAAATTTTTACCCCGTT---GAGACTGCTCGTAAATCTAATATGAGACACCG 105219 ||||||| || ||||||||| ||| || ||||| || ||| | ||||| Sbjct 86753 TATTGATGTGAACCACTACCCCGTTATCGAG---GCCCGTAACAGCAACATGCGCCACCG 86697 Query 105220 TCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATT 105279 || || ||| | |||||||||||||| || |||| ||| | |||| | || Sbjct 86696 CCCCATCGGTGTTGGTGTTCAGGGTCTGGCTGATGCCTTCCTGGCCCTTCGCATGCCTTT 86637 Query 105280 TGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGC 105339 ||| || | || || | |||| || || ||||||||||| || ||||| || Sbjct 86636 TGAGTCTGCTGAGGCCCGTCAGCTCAACAAGCAGATCTTTGAGACCATTTACCACGCTGC 86577 Query 105340 TCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTC 105399 || |||||| | || | || |||| ||||| || |||| |||||||| Sbjct 86576 CCTCGAGGCGTCGTGCGATATTGCTATTCTTGAAGGTCCCTACTCGACCTACGAGGGTTC 86517 Query 105400 TCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCAC-- 105457 ||| | || || || | ||||| || || ||||||| | || | || || | || Sbjct 86516 TCCTGTCTCTCAGGGTATCCTTCAGTTCGACATGTGGG-ATGTTACCCCCAG--TGACCT 86460 Query 105458 -TACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCT 105516 | |||||| | || | ||||| | |||||| || | ||| |||| ||| || || Sbjct 86459 GTGGGACTGGAACTCTTTGAAGGACCAGATCAAGCAGCACGGTGTTCGCAACTCCCTTCT 86400 Query 105517 CATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGA 105576 |||| || ||||| |||||||| || | || || ||||||| || || ||||| || Sbjct 86399 TTTGGCCCCTATGCCCACAGCCTCGACGTCCCAGATTCTGGGTAACAACGAGTGCTTCGA 86340 Query 105577 ACCCTACACGACGAACATCTA 105597 || ||||| | ||||| || Sbjct 86339 GCCTTACACTTCCAACATTTA 86319 >seq38 Length=199572 Score = 111 bits (122), Expect = 2e-19 Identities = 150/206 (73%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 94753 AAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAA--AGTCGCGTTCCTTTGCTGAGCGA 94809 || || || ||||| |||||||| || |||| ||||| ||||||| |||| Sbjct 76515 AAGGCCGACTGGGCCCTGAAGTGGATTACCGACAAGGAGTCGA---CCTTTGCCCAGCGT 76571 Query 94810 CTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTAT 94869 || | || ||||| |||||||||||||||||||||||| |||| | |||| | | Sbjct 76572 CTGGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCTCTGGTGCCTTTGCCTCTATCTTT 76631 Query 94870 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 94929 ||||| ||||| ||| | ||||| ||| | |||||| |||||||| ||||| ||| Sbjct 76632 TGGCTGCGCAAGCGTGGTATGATGCCCGGTTTGACCTTCTCAAACGAGCTGATCTCCCGT 76691 Query 94930 GACGAGGGACTCCACCAAGAGTTTGC 94955 || ||||| || ||| || ||||| Sbjct 76692 GATGAGGGTCTTCACACCGACTTTGC 76717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583258138872600