Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06-
26] 365 sequences; 25,429,610 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq24 150 5e-31
seq102 120 9e-22
seq96 96.9 1e-14
>seq24
Length=264051
Score = 150 bits (166), Expect = 5e-31
Identities = 172/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || ||||| || ||||||||||| || ||||| || || ||
Sbjct 250116 CATACCACCACGGAGACGAAGGACAAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTC 250057
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || ||||| ||||| || || ||||| || || ||||| ||||| || ||
Sbjct 250056 GGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCCGG 249997
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|||||| || || || ||||| || || | || || || ||||| | ||||| | ||
Sbjct 249996 AGGAATACCCTCCTTGTCCTGGATCTTGGACTTCACGTTGTCAATGGTGTCAGAGGACTC 249937
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||| ||||| || | ||||| || || || || || ||||| ||||||||
Sbjct 249936 AACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 249886
Score = 134 bits (148), Expect = 4e-26
Identities = 173/236 (73%), Gaps = 2/236 (1%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||||| |||||||| | | ||||| || || ||||| ||||| || || || || |
Sbjct 250576 TTTACTGGCCACCACGAAGACGGAGAACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGT 250517
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| ||||| | || || || || || || || || ||||||||||| ||||| ||||| |
Sbjct 250516 AGTCAGACAGGGTACGGCCGTCCTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGT 250457
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681
| || || || || || || ||||| || || ||| || || || ||||| | ||||||
Sbjct 250456 CGGGGGGGATACCCTCCTTGTCCTGGATCTT-GCTCTTCACGTTGTCAATGGTATCAGAA 250398
Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| || |||||||| || | |||||||| || || || || || || ||||||||
Sbjct 250397 GACTCGACTTCAAGAGTGATGGTCTTTCCAGTGAGAGTCTTCACGAAGATCTGCAT 250342
Score = 123 bits (136), Expect = 8e-23
Identities = 166/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | ||||| | |||||||| ||||| || || || || |||||
Sbjct 250344 CATACCACCACGGAGACGGAGAACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATC 250285
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || ||||| ||||| || || || || || || | ||| ||||| || ||
Sbjct 250284 CGAGAGAGTACGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCCGG 250225
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || || ||||| || || | || ||||| || || | ||| || | ||
Sbjct 250224 GGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTATCTGACGACTC 250165
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| ||||| |||| ||||| || || || || || || || ||||||||
Sbjct 250164 GACCTCAAGGGTAATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 250114
Score = 116 bits (128), Expect = 1e-20
Identities = 150/207 (72%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || ||||| ||||| || ||||| || ||||| || || ||
Sbjct 249888 CATACCACCACGAAGGCGGAGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTC 249829
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || ||||| ||||| || |||||||| || || || || ||||| || ||
Sbjct 249828 GGAGAGGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAAATAAGGCGCTGCTGGTCCGG 249769
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
||||| || || || |||||||| || | || || || ||||| | || || | ||
Sbjct 249768 GGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAGGACTC 249709
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713
|| || || || | ||||| |||||
Sbjct 249708 GACCTCGAGGGTGATGGTCTTGCCGGT 249682
>seq102
Length=75333
Score = 120 bits (132), Expect = 9e-22
Identities = 262/390 (67%), Gaps = 2/390 (1%)
Strand=Plus/Plus
Query 349493 ATTGAGGTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAAT 349551
|| |||||||| | || ||||| || || || || ||||| || || || || ||
Sbjct 25138 ATCGAGGTTGAGTTCAAGGGTGAGACCAAGACC-TTCACCCCCGAGGAGATCTCCTCCAT 25196
Query 349552 GGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGC 349611
||| | | || ||| || | |||||| | || | ||| || || | | ||
Sbjct 25197 GGTCCTGATCAAGATGCGTGAGACTGCTGAGTCCTACCTCGGTACCACCGTCAACCAGGC 25256
Query 349612 TGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGG 349671
|| | ||||| || ||||| || || || | |||||| || || || ||||||||
Sbjct 25257 CGTCGTCACTGTCCCCGCCTACTTCAACGACTCTCAGCGTCAGGCTACCAAGGATGCTGG 25316
Query 349672 CAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGC 349731
||||| || | || ||||| | || || || || ||||||||||| || || ||
Sbjct 25317 TTTGATTGCCGGTCTTAACGTTCTCCGTATCATCAACGAGCCCACTGCTGCTGCCATCGC 25376
Query 349732 ATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGG 349791
|| || ||||| || | | || || || | || || || ||| | |||||
Sbjct 25377 CTACGGTCTTGACAAGAAGGTCGAGGGTGAGCGCAACGTCCTGATCTTCGATCTTGGTGG 25436
Query 349792 TGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAAC 349851
||||||||| ||||| || || || || |||| || || || || || || || | ||
Sbjct 25437 TGGTACTTTCGATGTTTCCCTCCTTACCATTGAGGATGGTATCTTCGAGGTCAAGTCCAC 25496
Query 349852 TGCTGGTGATACACATCTTGGTGGAGAAGA 349881
||||||||| || || |||||||| |||||
Sbjct 25497 TGCTGGTGACACTCACCTTGGTGGTGAAGA 25526
>seq96
Length=85826
Score = 96.9 bits (106), Expect = 1e-14
Identities = 134/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609
|| || || || || ||||| | || || ||||| || || || || ||||| |||||
Sbjct 59306 TTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 59365
Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669
|| || ||||| || || ||||| || || || ||||| || || | || || || ||
Sbjct 59366 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 59425
Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729
|||| || || | || || ||||| || | ||||| || || || || || || |||
Sbjct 59426 ATCGTGTCCGAAGACTCGACCTCAAGGGTGATCGTCTTACCCGTAAGGGTCTTAACGAAA 59485
Query 140730 ATCTGCAT 140737
||||||||
Sbjct 59486 ATCTGCAT 59493
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515247313818095
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |