Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06- 26] 365 sequences; 25,429,610 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq59 176 5e-39 seq17 143 3e-29 seq38 102 9e-17 >seq59 Length=151500 Score = 176 bits (194), Expect = 5e-39 Identities = 384/569 (67%), Gaps = 12/569 (2%) Strand=Plus/Minus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254 ||||| || || | |||||| |||||| | |||||| | || || ||| || Sbjct 87682 ATGCGTGTAGCTGTCGGTATCTGGGGTGACAATGTTGAGCGTGTTCTGGAAACTTACAAC 87623 Query 53255 TTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311 | ||| ||| |||| ||| || || || | || ||||| |||||||||||||| Sbjct 87622 CTCATGTCGAGC---AAGTTCTTCACTCATGCATCTCCTACCCTCTTCAACGCTGGTACT 87566 Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 || || ||| | || |||||| |||| | |||||||| ||| ||||| || Sbjct 87565 CCCCAGCCCCAGCTTTCTTCTTGCTTCTTGGTAGACATGAAGGAGGACAGTATCGAAGGT 87506 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431 ||||| || || |||||| || || ||||||||| | ||||||| || ||| || Sbjct 87505 ATCTATGACACCCTCAAGACTTGCGCTATGATCTCCAAGATGGCGGGTGGCATTGGTCTC 87446 Query 53432 CACTGCTCGAACGT--CCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCG 53489 || | | ||| |||||| | || | || || || ||||| | | Sbjct 87445 AACG--TACACCGTATCCGTGCTACTGGTTCTTACATTGCTGGCACCAACGGTACCTCGA 87388 Query 53490 ATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTG 53549 | || || || || ||| | || ||||||||||| || || || |||||| | ||||||| Sbjct 87387 ACGGTATTGTTCCCATGTTGCGTGTCTTCAACAATACTGCTCGTTACGTCGATCAGGGTG 87328 Query 53550 GTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGG 53609 || ||||| || | || ||||| ||||| |||||||||||||| || | | | Sbjct 87327 GTAACAAGCGTCCCGGTGCTTTTGCCATTTACCTGGAGCCGTGGCACGCTGATGTGTTCG 87268 Query 53610 AGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTT 53668 |||| || || || || ||| || ||| | || ||||| || ||| || || |||| Sbjct 87267 AGTTCCTTGATCTCCGGAAGAACCACGGTAAGGAGGAGATTCG-TGCTCGCGATTTGTTC 87209 Query 53669 ACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTAC 53728 || |||||||||| || | |||||| | || |||||| ||| | ||| Sbjct 87208 CTTGCCTTGTGGATTCCTGATTTGTTCATGAAGCGTGTTGAGAAGAACGGCAACTGGACT 87149 Query 53729 CTGATGTGCCCGAACGAGTGCCCCGGCCT 53757 || |||||||| ||||||||||| ||||| Sbjct 87148 CTCATGTGCCCCAACGAGTGCCCTGGCCT 87120 Score = 109 bits (120), Expect = 6e-19 Identities = 300/452 (66%), Gaps = 17/452 (4%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 ||||||||||| || |||| || ||||| || || |||||| | ||||| |||| ||| Sbjct 86413 CGCAACTCCCTTCTTTTGGCCCCTATGCCCACAGCCTCGACGTCCCAGATTCTGGGTAAC 86354 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| |||||||| ||||| ||||||| |||| |||||| | || |||||| Sbjct 86353 AACGAGTGCTTCGAGCCTTACACTTCCAACATTTACCAGCGCCGTGTGTTGGCTGGTGAG 86294 Query 55604 TTTGTCATGATCAACAAGCA----CCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAA 55659 || | ||||| | | |||| |||||| | | |||| Sbjct 86293 TTCCAGGTTGTCAACCCGTGGTTGCTTCGT----GACCTGGTTGACCTTGGTCTGTGGTC 86238 Query 55660 CCCGCAGATCAAGA--CGGATATTGTGCGGAACGGGGGGTCCGTCCAGAA--TCTGGAG- 55714 | | || |||| || || | | || || || || ||||||| || || Sbjct 86237 CGACAACATGAAGAACCGTATCATTTCCG--ACAACGGTTCTATCCAGAACATCCCCAGC 86180 Query 55715 ATTCCT-CTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCT 55773 |||||| ||| ||||| | ||| |||||| ||||||||| | ||| | | | Sbjct 86179 ATTCCTGCTGACA-TCAAGTCTCTGTACAAGACGGTTTGGGAGATTTCTCAGCGCACTGT 86121 Query 55774 GATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTT 55833 || | ||| || ||||||||||| | || || ||||| ||||| ||||||| Sbjct 86120 TGTTCAAATGGCGGCCGATCGTGGTGCCTTTATTGATCAGTCTCAGTCGTTGAACATTCA 86061 Query 55834 CATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGG 55893 |||| || | ||| | ||| ||| | | | |||||||| ||| |||||| || Sbjct 86060 CATGAAGGACCCTACCATGGGTAAGATCACCAGCATGCACTTCGCCGGTTGGAAGCTCGG 86001 Query 55894 ACTCAAGACGGGTATGTACTATCTGCGGACCC 55925 |||||||||||||||||||| ||||| |||| Sbjct 86000 TCTCAAGACGGGTATGTACTACCTGCGTACCC 85969 >seq17 Length=280677 Score = 143 bits (158), Expect = 3e-29 Identities = 198/275 (72%), Gaps = 4/275 (1%) Strand=Plus/Plus Query 117299 AGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCG 117358 || |||||| ||| ||||||| |||||||| |||||||||||||| | ||| Sbjct 145816 AGACGAGTGTGAATATAACGAGCCGAGGCAGCATCTGAACCACCAGCAAGACGAGAACCA 145875 Query 117359 AATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAG 117418 || | ||||| ||||||||| || | |||||| | || ||||||| ||||| | Sbjct 145876 AAGTTACCACTGGGCTCCAAGCAATTGACGTTGTTAGAACCGACAAAGTCCTGAGCAAGA 145935 Query 117419 TTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACG 117478 | |||||| || ||| || ||||| || || |||| |||||| ||| || Sbjct 145936 CCAATAATCGTCTGCTGCAGGGAAGCTTCACCGTGTTGGTACGACGTCTGACCCGAAACA 145995 Query 117479 TAGCCCGCCAGCTGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAGGCAGGCAT 117536 || || |||| || | | |||||||| || |||| || ||| |||||| ||||||| Sbjct 145996 TAACCAGCCAACTCAACAACCTTCATATCCTTGAC--CACGTTACTCTTGAAACAGGCAT 146053 Query 117537 AAATCACCTTGCGCTGACTTGGCTTCAGACCATCC 117571 | || ||||||||||||| |||||||| |||||| Sbjct 146054 ACATAACCTTGCGCTGACCAGGCTTCAGTCCATCC 146088 Score = 123 bits (136), Expect = 3e-23 Identities = 231/332 (70%), Gaps = 8/332 (2%) Strand=Plus/Plus Query 152782 CCCTTGATGTGCGATCCGTCAAGATCCGCGTCGGTCATGATCATCAGACGACCGTAGCGC 152841 |||||||| ||||| || || ||||| |||| ||||||||||||| |||| || || Sbjct 146581 CCCTTGATATGCGAACCATCGTGATCCTGATCGGCCATGATCATCAGATGACCATAACGA 146640 Query 152842 AGGTCACGTAGTGACCCGTAGACCTTTCCATGT--TGAAGCCCGAGGATCTTTTTGAGGT 152899 || | | | || | |||| | | || ||| | ||| || | || || ||||| | Sbjct 146641 AGCCC-CTTGGT-ATCCGTGTAAACTGCCTTGTGCTTAAGACCCAAGAACTGTTTGATAT 146698 Query 152900 TGGAAAATTCCTCATTATCGGTCACCTGTTTCACCGTGGCATCCCGAACATTGCGCGGCT 152959 | || ||||| || | ||| | ||| | || | ||||| ||||| ||| || || Sbjct 146699 TTTGAATTTCCTGGTTCTTGGTAATCTGGTCCAAAGAAGCATCACGAACGTTGAGCATCT 146758 Query 152960 TTCCCCGGAGTGGAAACACGCCGAACGCGTTGCGG--CCTACAACGCTCAGACCGGCAAT 153017 | || |||||||| || || || || ||| | || || | | || | |||| |||| Sbjct 146759 TACCACGGAGTGGGAAAACACC-AATGCGGTCAGGATCCAAAATGGCAC-GACCAGCAAC 146816 Query 153018 AGCAAGGGCTTTCGCCGAGTCACCCTCGGTGATAATAAGCGTACAGTCGTGAGACCGATG 153077 || | | || ||||||||||| ||||| | ||| || ||||| |||||| ||| | Sbjct 146817 GGCCAAAGACTTGGCCGAGTCACCTTCGGTCAGAATCAGAGTACACTCGTGACCACGACG 146876 Query 153078 AGTACCGGCCCAGTTGGCGTCGTCAAGCTTGG 153109 ||||| ||| ||||||| || ||||||||| Sbjct 146877 GGTACCAGCCAAGTTGGCATCTACAAGCTTGG 146908 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 152049 GGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTT 152108 ||| ||||| ||||| || || || | ||||| | ||| |||||| | | || Sbjct 145842 GGCAGCATCTGAACCACCAGCAAGACGAGAACCAAAGTTACCACTGGGCTCCAAGCAATT 145901 Query 152109 GAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGC 152168 || |||||| | || || || | |||||| | | | |||||| |||||| || Sbjct 145902 GACGTTGTTAGAACCGACAAAGTCCTGAGCAAGACCAATAATCGTCTGCTGCAGGGAAGC 145961 Query 152169 TTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCAT 152228 ||||||||| || |||| |||||| ||| | || || ||||||| | |||||||| Sbjct 145962 TTCACCGTGTTGGTACGACGTCTGACCCGAAACATAACCAGCCAACTCAACAACCTTCAT 146021 Query 152229 GTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTG 152276 ||| | || ||| |||||| |||||| || || ||||||||||| Sbjct 146022 ATCCTTGACCACGTTACTCTTGAAACAGGCATACATAACCTTGCGCTG 146069 >seq38 Length=199572 Score = 102 bits (112), Expect = 9e-17 Identities = 393/607 (65%), Gaps = 24/607 (4%) Strand=Plus/Minus Query 74728 TCAGGTGAGAGTAAAGC-GTCACGGCAAACTCCTGATGCGAG--CCTTCATCTCTGCTTA 74784 ||| ||||||| |||| | || |||||| || | || || || ||||| | | | Sbjct 76740 TCAAGTGAGAGAAAAGAAGGCA-GGCAAAGTC--GGTGTGAAGACCCTCATCACGGGAGA 76684 Query 74785 TCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGAT-- 74842 ||| || || || || | | || ||||| | |||||||| || ||||||||| Sbjct 76683 TCAGCTCGTTTGAGAAGGTCAAACCGGGCATCATACCACGCTTGCGCAGCCAAAAGATAG 76624 Query 74843 -GGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTT 74901 |||| |||| |||| ||||||||| || || || |||||||| || || || | Sbjct 76623 AGGCA---AAGGCACCAGAGAAGAAGATACCCTCAACGGCAGCAAAGGCAACCAGACGCT 76567 Query 74902 GCGCGAACGGTGCATC---GGAAGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGA 74958 | || || | | || | || ||||| || | ||||| || || || || || Sbjct 76566 GGGCAAAGGTCGACTCCTTGTCGGTAATCCACTTCAGGGCCCAGTCGGCCTTGCGGCGGA 76507 Query 74959 CCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCG--GGATCCTTGAC 75016 ||| | ||||| || || | ||| ||| | | | | || | || ||||||| Sbjct 76506 TGCAAGGAATGGTATCAATGGCGTTGAACAGG--TACGTGCGCTGAGCAGGCTCCTTGAT 76449 Query 75017 GAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTA 75076 | | || |||| || |||||||||||||| ||||| ||| | | |||| | Sbjct 76448 GTAGGTATCGATCAGGAGGGAGTACGTCTCCGAGTGAATGTTCTCCATCATAATCTGGAA 76389 Query 75077 CGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCGATATT 75136 |||| || | || ||||| | |||||| || || || ||| | | | | || Sbjct 76388 ACCGTAAAAGCAGCGGGCCTCGGGAATCTGCACCTCGGCAGAGAAACGCTCGACCAAGTT 76329 Query 75137 CTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCG 75196 ||| |||| || ||||| ||||| ||||| || || || || ||| ||| | Sbjct 76328 CTCGTTGACAATACCGTCAGAGGCAGCGAAGAAGGCAAGGACGTGAGAGATGAAGAACTG 76269 Query 75197 CTCATC----GTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCT 75252 ||||| |||| || | |||| ||| || | || ||| | ||| |||||||||| Sbjct 76268 TTCATCCTTGGTCA-TGCGGTTGTTCCAGTCGTGAAGATCCTTGGACAAGTCAATCTCCT 76210 Query 75253 CGACCGTCCAGAAACTCCCAATCGCCTTTTTGTACAAAGACCACAAGTCAGGGTAATTGA 75312 || | ||||||||| | ||||| ||||||| ||| | ||| |||| |||| Sbjct 76209 CGGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTGCCAGATCTCATGGTACTTGA 76150 Query 75313 TTGGAAA 75319 | || || Sbjct 76149 TGGGGAA 76143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547213503327000