Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06- 26] 365 sequences; 25,429,610 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq59 172 8e-38 >seq59 Length=151500 Score = 172 bits (190), Expect = 8e-38 Identities = 454/686 (66%), Gaps = 18/686 (3%) Strand=Plus/Plus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 ||||||||||| || | ||| ||| |||||||| || || |||||||| | | | Sbjct 87093 TCAAATTCATCGCCATAGCAGTCAGCCAGGCCAGGGCACTCGTTGGGGCACATGAGAGTC 87152 Query 77985 CAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 78044 |||| || | | || ||| || ||||| || | |||||| ||||| | |||| || Sbjct 87153 CAGTTGCCGTTCTTCTCAACACGCTTCATGAACAAATCAGGAATCCACAAGGCAAGGAAC 87212 Query 78045 AGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATA 78104 | ||| || | | | || || || || ||||| ||||| || ||||| | Sbjct 87213 AAATCGCGAGCACGAATCTCCTCCTTACCGTGGTTCTTCCGGAGATCAAGGAACTCGAAC 87272 Query 78105 ATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCC 78164 | ||||| ||||| || || || || || || | | | || || || || ||||| ||| Sbjct 87273 ACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACCGGGACGCTTGTTACCACCC 87332 Query 78165 TGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGAT 78224 ||||| | || | || || || || | || | |||||| |||| ||||||||| || Sbjct 87333 TGATCGACGTAACGAGCAGTATTGTTGAAGACACGCAACATGGGAACAATACCGTTCGAG 87392 Query 78225 GTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATA----TTACTAATGGATAT 78280 || || || || |||| ||| ||| ||| | || || ||| ||| | || | Sbjct 87393 GTACCGTTGGTGCCAGCAATGTAAGAACCAGTAGCACGGATACGGTGTAC--GTTGAGA- 87449 Query 78281 CCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACC 78340 || || || || |||||||| || || | ||||||| || | || || |||||||| Sbjct 87450 -CCAATGCCACCCGCCATCTTGGAGATCATAGCGCAAGTCTTGAGGGTGTCATAGATACC 87508 Query 78341 CTCTATACTGTCATCCATCATGT-TAAGAAGAAAACAGCTAGACATTTGATGATGAACAG 78399 || |||||||| ||| |||||| || ||| || || ||| | || | || || Sbjct 87509 TTCGATACTGTCCTCCTTCATGTCTACCAAG-AAGCAAGAAGAAAGCTGGGGCTGGGGAG 87567 Query 78400 TTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGT 78459 | || || || || | || ||||||||||| || || | || || | || |||| Sbjct 87568 TACCAGCGTTGAAGAGGGTAGGAGATGCATGAGTGAAGAACTTGCTCGACATGAGGTTGT 87627 Query 78460 ATGTTTCAATAGCTGATTCTA---TGTC-CCATTGATGAATTCCTACCGCTACACGCATC 78515 | ||||| | | | || | |||| || | || || || ||||||||||| Sbjct 87628 AAGTTTCCAGAACACGCTCAACATTGTCACCCCAG----ATACCGACAGCTACACGCATA 87683 Query 78516 AACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCC 78575 | ||| |||||||| | ||||| |||| | | || | | || ||| ||||| Sbjct 87684 ATCATGTGCTGAGGACGCTCAACAATCTTGCCGTCAAGCTTGAGAAGATAGGATCTTTCC 87743 Query 78576 AAAGTTTTAAAACCAAAATAGTTGTA 78601 || || || |||||||| || | ||| Sbjct 87744 AAGGTCTTGAAACCAAAGTACTGGTA 87769 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 76782 GTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 76841 || ||||| || |||| || || | || ||||| || ||||||||||| || || ||| Sbjct 85941 GTGAACTGGATAGGAGCAGCAGCAGCTTGGGTACGCAGGTAGTACATACCCGTCTTGAGA 86000 Query 76842 CCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATA 76901 || || |||| ||| ||| |||||||| || | || |||| || || Sbjct 86001 CCGAGCTTCCAACCGGCGAAGTGCATGCTGGTGATCTTACCCATGGTAGGGTCCTTCATG 86060 Query 76902 TGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATA 76961 ||||| |||| ||||||| ||||| || || || || | ||| |||||||||| | | Sbjct 86061 TGAATGTTCAACGACTGAGACTGATCAATAAAGGCACCACGATCGGCCGCCATTTGAACA 86120 Query 76962 ATGGTCTTTTGAGGAATTTCCCAAATAGTTTTG 76994 | || |||| ||| ||||||| || ||| Sbjct 86121 ACAGTGCGCTGAGAAATCTCCCAAACCGTCTTG 86153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694665630573600