Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06- 26] 365 sequences; 25,429,610 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq96 183 6e-41 seq14 174 3e-38 seq24 170 4e-37 seq38 120 6e-22 seq17 87.8 4e-12 >seq96 Length=85826 Score = 183 bits (202), Expect = 6e-41 Identities = 155/191 (81%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||||| ||| |||||||||||||| || || || || || |||||| Sbjct 59306 TTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 59365 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | || || ||||| ||||| ||||||||||| |||||||| | || ||| | ||| Sbjct 59366 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 59425 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAAT 283091 || |||||||||| ||||| || || ||||||||||||||||| | ||||||||||| Sbjct 59426 ATCGTGTCCGAAGACTCGACCTCAAGGGTGATCGTCTTACCCGTAAGGGTCTTAACGAAA 59485 Query 283092 ATCTGCATTTT 283102 |||||||| || Sbjct 59486 ATCTGCATCTT 59496 >seq14 Length=289536 Score = 174 bits (192), Expect = 3e-38 Identities = 170/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || ||||| || | ||| || || |||||||||||||| | Sbjct 256436 ACCACCACGGAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGA 256377 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || || ||||||| || || ||||| || Sbjct 256376 CAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGAGG 256317 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||| |||||||| | || ||| | ||||| |||||||| | ||||| Sbjct 256316 AATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGAC 256257 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || || ||||| ||||||||||||| ||||| ||||| Sbjct 256256 CTCCAGGGTGATGGTCTTACCCGTCAGGGTCTTGACGAA 256218 >seq24 Length=264051 Score = 170 bits (188), Expect = 4e-37 Identities = 176/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || ||||| || | ||| || || |||||||||||||||| Sbjct 250568 CCACCACGAAGACGGAGAACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 250509 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||| ||||| || || || || |||||||| | ||| || ||||| || Sbjct 250508 AGGGTACGGCCGTCCTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGGGGG 250449 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| |||||| ||||| || ||| | || || || || |||| ||||| Sbjct 250448 ATACCCTCCTTGTCCTGGATC-TTGCTCTTCACGTTGTCAATGGTATCAGAAGACTCGAC 250390 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| |||||||| ||||| || || | |||||| ||||| |||||||| Sbjct 250389 TTCAAGAGTGATGGTCTTTCCAGTGAGAGTCTTCACGAAGATCTGCAT 250342 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| || || || | || || || || ||||||||||| | Sbjct 250113 ACCACCACGGAGACGAAGGACAAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGA 250054 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || || || |||| ||| || ||||| || Sbjct 250053 GAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCCGGAGG 249994 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||| |||||||| | || ||| | || || ||||| || | || || Sbjct 249993 AATACCCTCCTTGTCCTGGATCTTGGACTTCACGTTGTCAATGGTGTCAGAGGACTCAAC 249934 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || |||| ||||| || || |||||||| Sbjct 249933 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 249886 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| || | ||| || || ||||||||||| || | Sbjct 250341 ACCACCACGGAGACGGAGAACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGA 250282 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||||||||| || || || ||||| || |||||||| || ||||| || Sbjct 250281 GAGAGTACGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCCGGGGG 250222 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| |||||||| | || || | ||||| || || || | ||||| Sbjct 250221 GATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTATCTGACGACTCGAC 250162 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || ||||| || |||| ||||| ||||| |||||||| Sbjct 250161 CTCAAGGGTAATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 250114 Score = 129 bits (142), Expect = 1e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || || || | ||| || || || ||||||||||| | Sbjct 249885 ACCACCACGAAGGCGGAGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGA 249826 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| |||||||| || || || || || || || | || || ||||| || Sbjct 249825 GAGGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAAATAAGGCGCTGCTGGTCCGGGGG 249766 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||| || ||||| | || ||| | || |||||||| || | ||||| Sbjct 249765 AATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAGGACTCGAC 249706 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 ||||| ||||| ||||| || || Sbjct 249705 CTCGAGGGTGATGGTCTTGCCGGT 249682 >seq38 Length=199572 Score = 120 bits (132), Expect = 6e-22 Identities = 161/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 230187 GAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTC 230246 || ||||||||| || || ||| |||| ||| |||| | || ||||| ||||| ||| Sbjct 76797 GAGAAGGAGTTCCTTACTGAGGCTCTTCCCTGCGCTCTTCTTGGTATGAACGCTGACCTC 76856 Query 230247 ATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAA 230306 ||| | || ||||| ||||| || || ||| || | ||||| || || |||| || Sbjct 76857 ATGAAGACTTACATCGAGTTCGTCGCCGACCGTCTTCTGGTGGCTCTCGGCAACGACAAG 76916 Query 230307 GTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACT 230366 ||||| || | |||||||||| |||||||| ||| || ||| || || || Sbjct 76917 GTGTACAAGGCTTCTAACCCCTTCGACTTTATGGAAAACATCTCCCTCGGTGGCAAGACC 76976 Query 230367 AACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCGGTGT 230410 ||||||||||| ||||||||| | || || || | | | ||||| Sbjct 76977 AACTTCTTCGAGAAGCGTGTCGGTGACTACCAGAAGGCTGGTGT 77020 >seq17 Length=280677 Score = 87.8 bits (96), Expect = 4e-12 Identities = 129/175 (74%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 274544 ATCTGTCATGATCATAACATGTCCATACCGAAGCGAGGAAGTATCTTTATACAACTTCCC 274603 ||| | ||||||||| | ||| ||||| |||||| ||||| | || |||| || Sbjct 146610 ATCGGCCATGATCATCAGATGACCATAACGAAGCCCCTTGGTATCCGTGTA-AACTGCCT 146668 Query 274604 TGTT-TGAAG-CCCAAGAATTTGCTTGAGAGCGGTGATTTCTTCGTTCTTTGTGATACTC 274661 ||| | ||| |||||||| | | |||| | ||||| | |||||| || || || Sbjct 146669 TGTGCTTAAGACCCAAGAACT-GTTTGATATTTTGAATTTCCTGGTTCTTGGTAAT-CTG 146726 Query 274662 G-CCACAGAAGCATCACGTACGTTCAGCAACTTACCGCGGAGAGGGAAAACGCCA 274715 | ||| |||||||||||| ||||| |||| |||||| ||||| |||||||| ||| Sbjct 146727 GTCCAAAGAAGCATCACGAACGTTGAGCATCTTACCACGGAGTGGGAAAACACCA 146781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046734304858710