Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06-
26] 365 sequences; 25,429,610 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq96 183 6e-41
seq14 174 3e-38
seq24 170 4e-37
seq38 120 6e-22
seq17 87.8 4e-12
>seq96
Length=85826
Score = 183 bits (202), Expect = 6e-41
Identities = 155/191 (81%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
|| |||||||||||||||| ||| |||||||||||||| || || || || || ||||||
Sbjct 59306 TTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 59365
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031
| || || ||||| ||||| ||||||||||| |||||||| | || ||| | |||
Sbjct 59366 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 59425
Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAAT 283091
|| |||||||||| ||||| || || ||||||||||||||||| | |||||||||||
Sbjct 59426 ATCGTGTCCGAAGACTCGACCTCAAGGGTGATCGTCTTACCCGTAAGGGTCTTAACGAAA 59485
Query 283092 ATCTGCATTTT 283102
|||||||| ||
Sbjct 59486 ATCTGCATCTT 59496
>seq14
Length=289536
Score = 174 bits (192), Expect = 3e-38
Identities = 170/219 (78%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || || ||||| || | ||| || || |||||||||||||| |
Sbjct 256436 ACCACCACGGAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGA 256377
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||||||||| || || || || || ||||||| || || ||||| ||
Sbjct 256376 CAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGAGG 256317
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||||||||||||||| |||||||| | || ||| | ||||| |||||||| | |||||
Sbjct 256316 AATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGAC 256257
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
|| || ||||| ||||||||||||| ||||| |||||
Sbjct 256256 CTCCAGGGTGATGGTCTTACCCGTCAGGGTCTTGACGAA 256218
>seq24
Length=264051
Score = 170 bits (188), Expect = 4e-37
Identities = 176/228 (77%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|||||||| || || || ||||| || | ||| || || ||||||||||||||||
Sbjct 250568 CCACCACGAAGACGGAGAACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 250509
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| || ||||| ||||| || || || || |||||||| | ||| || ||||| ||
Sbjct 250508 AGGGTACGGCCGTCCTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGGGGG 250449
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|||||||||||||| |||||| ||||| || ||| | || || || || |||| |||||
Sbjct 250448 ATACCCTCCTTGTCCTGGATC-TTGCTCTTCACGTTGTCAATGGTATCAGAAGACTCGAC 250390
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||| |||||||| ||||| || || | |||||| ||||| ||||||||
Sbjct 250389 TTCAAGAGTGATGGTCTTTCCAGTGAGAGTCTTCACGAAGATCTGCAT 250342
Score = 150 bits (166), Expect = 4e-31
Identities = 170/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || ||||| || || || | || || || || ||||||||||| |
Sbjct 250113 ACCACCACGGAGACGAAGGACAAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGA 250054
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||||||||| || || || || || || |||| ||| || ||||| ||
Sbjct 250053 GAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCCGGAGG 249994
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||||||||||||||| |||||||| | || ||| | || || ||||| || | || ||
Sbjct 249993 AATACCCTCCTTGTCCTGGATCTTGGACTTCACGTTGTCAATGGTGTCAGAGGACTCAAC 249934
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || ||||| ||||| || |||| ||||| || || ||||||||
Sbjct 249933 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 249886
Score = 150 bits (166), Expect = 4e-31
Identities = 170/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || || |||| || | ||| || || ||||||||||| || |
Sbjct 250341 ACCACCACGGAGACGGAGAACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGA 250282
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || ||||||||||| || || || ||||| || |||||||| || ||||| ||
Sbjct 250281 GAGAGTACGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCCGGGGG 250222
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|||||||||||||| |||||||| | || || | ||||| || || || | |||||
Sbjct 250221 GATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTATCTGACGACTCGAC 250162
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || || || ||||| || |||| ||||| ||||| ||||||||
Sbjct 250161 CTCAAGGGTAATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 250114
Score = 129 bits (142), Expect = 1e-24
Identities = 151/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| || || || || | ||| || || || ||||||||||| |
Sbjct 249885 ACCACCACGAAGGCGGAGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGA 249826
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| ||||| |||||||| || || || || || || || | || || ||||| ||
Sbjct 249825 GAGGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAAATAAGGCGCTGCTGGTCCGGGGG 249766
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||||||||||||||| || ||||| | || ||| | || |||||||| || | |||||
Sbjct 249765 AATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAGGACTCGAC 249706
Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075
||||| ||||| ||||| || ||
Sbjct 249705 CTCGAGGGTGATGGTCTTGCCGGT 249682
>seq38
Length=199572
Score = 120 bits (132), Expect = 6e-22
Identities = 161/224 (72%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 230187 GAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTC 230246
|| ||||||||| || || ||| |||| ||| |||| | || ||||| ||||| |||
Sbjct 76797 GAGAAGGAGTTCCTTACTGAGGCTCTTCCCTGCGCTCTTCTTGGTATGAACGCTGACCTC 76856
Query 230247 ATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAA 230306
||| | || ||||| ||||| || || ||| || | ||||| || || |||| ||
Sbjct 76857 ATGAAGACTTACATCGAGTTCGTCGCCGACCGTCTTCTGGTGGCTCTCGGCAACGACAAG 76916
Query 230307 GTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACT 230366
||||| || | |||||||||| |||||||| ||| || ||| || || ||
Sbjct 76917 GTGTACAAGGCTTCTAACCCCTTCGACTTTATGGAAAACATCTCCCTCGGTGGCAAGACC 76976
Query 230367 AACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCGGTGT 230410
||||||||||| ||||||||| | || || || | | | |||||
Sbjct 76977 AACTTCTTCGAGAAGCGTGTCGGTGACTACCAGAAGGCTGGTGT 77020
>seq17
Length=280677
Score = 87.8 bits (96), Expect = 4e-12
Identities = 129/175 (74%), Gaps = 6/175 (3%)
Strand=Plus/Plus
Query 274544 ATCTGTCATGATCATAACATGTCCATACCGAAGCGAGGAAGTATCTTTATACAACTTCCC 274603
||| | ||||||||| | ||| ||||| |||||| ||||| | || |||| ||
Sbjct 146610 ATCGGCCATGATCATCAGATGACCATAACGAAGCCCCTTGGTATCCGTGTA-AACTGCCT 146668
Query 274604 TGTT-TGAAG-CCCAAGAATTTGCTTGAGAGCGGTGATTTCTTCGTTCTTTGTGATACTC 274661
||| | ||| |||||||| | | |||| | ||||| | |||||| || || ||
Sbjct 146669 TGTGCTTAAGACCCAAGAACT-GTTTGATATTTTGAATTTCCTGGTTCTTGGTAAT-CTG 146726
Query 274662 G-CCACAGAAGCATCACGTACGTTCAGCAACTTACCGCGGAGAGGGAAAACGCCA 274715
| ||| |||||||||||| ||||| |||| |||||| ||||| |||||||| |||
Sbjct 146727 GTCCAAAGAAGCATCACGAACGTTGAGCATCTTACCACGGAGTGGGAAAACACCA 146781
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046734304858710
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |