Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06-
26] 365 sequences; 25,429,610 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq14 138 3e-27
seq24 134 3e-26
seq96 132 1e-25
>seq14
Length=289536
Score = 138 bits (152), Expect = 3e-27
Identities = 151/201 (75%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988
|||||| || || || || || || || |||||||| ||||| || ||| ||||||||
Sbjct 256217 TTTCGTCAAGACCCTGACGGGTAAGACCATCACCCTGGAGGTCGAGTCCTCGGACACCAT 256276
Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048
||| |||||||| ||||| |||||||| || || || |||||||||||||| || ||
Sbjct 256277 CGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAGCAGCGCCT 256336
Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
|||||||| || || ||||| || ||||| | || || | || || ||| |||| ||
Sbjct 256337 GATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCGGACTACAACATCCAGAA 256396
Query 178109 AGAATCAACACTGCATCTTGT 178129
|| || || || || || ||
Sbjct 256397 GGAGTCCACTCTCCACCTGGT 256417
>seq24
Length=264051
Score = 134 bits (148), Expect = 3e-26
Identities = 142/187 (76%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002
|||| || || || |||||||||||||| || ||| ||||| || || ||||||||
Sbjct 249680 TCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCCGACACTATTGACAACGTCAAGT 249739
Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062
|||||||||||||| || || || || ||||||||||| || ||||| ||||| ||||
Sbjct 249740 CCAAGATTCAGGACAAGGAGGGTATTCCCCCGGACCAGCAGCGCCTTATTTTCGCTGGAA 249799
Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122
| ||||| || ||||| | || || |||| || ||| | || || || || || || |
Sbjct 249800 AGCAGCTTGAGGATGGTCGCACCCTCTCCGACTACAACATTCAGAAGGAGTCCACCCTTC 249859
Query 178123 ATCTTGT 178129
| |||||
Sbjct 249860 ACCTTGT 249866
Score = 129 bits (142), Expect = 1e-24
Identities = 154/208 (74%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || || || || || || || ||||| ||||| || |||||
Sbjct 250117 CAGATCTTCGTCAAGACCCTGACTGGCAAGACCATTACCCTTGAGGTCGAGTCGTCAGAT 250176
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || ||||| ||||| |||||||| || || ||||| |||||||||||
Sbjct 250177 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAG 250236
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | || |||||||| || ||||| || ||||| | ||||| | ||||| ||| ||
Sbjct 250237 CGTTTGATTTTCGCCGGCAAGCAGCTTGAGGATGGCCGTACTCTCTCGGATTACAACATC 250296
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131
|| || || || || || || |||| ||
Sbjct 250297 CAGAAGGAGTCCACTCTTCA-CTTGGTT 250323
Score = 123 bits (136), Expect = 6e-23
Identities = 151/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || || || || || || || || |||||||| ||||| || ||| |||
Sbjct 249889 CAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGTCCTCTGAC 249948
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || ||||| || ||||| |||||||| || || || ||||||||||||||
Sbjct 249949 ACCATTGACAACGTGAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAGCAG 250008
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || ||||| || || ||||| || ||||| | || || |||| || ||| |
Sbjct 250009 CGTCTGATTTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATT 250068
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || |||||
Sbjct 250069 CAGAAGGAGTCTACTCTCCACCTTGT 250094
>seq96
Length=85826
Score = 132 bits (146), Expect = 1e-25
Identities = 149/199 (75%), Gaps = 3/199 (2%)
Strand=Plus/Minus
Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969
|||| || |||| | |||||||| || || || || || || ||||||||||| ||||
Sbjct 59501 AGGTCAAGATGC---AGATTTTCGTTAAGACCCTTACGGGTAAGACGATCACCCTTGAGG 59445
Query 177970 TGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCC 178029
| || || ||||| ||||| |||||||| ||||| |||||||| || || || |
Sbjct 59444 TCGAGTCTTCGGACACGATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTC 59385
Query 178030 CTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG 178089
| ||||||||||| || || |||||||| || || ||||| || ||||| | || |||
Sbjct 59384 CCCCGGACCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTTT 59325
Query 178090 CCGATTATAACGTCCAAAA 178108
| || || ||| |||| ||
Sbjct 59324 CTGACTACAACATCCAGAA 59306
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203725570675810
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |