Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Huntiella_20moniliformis_20[genbank_20GCA_5F000712465.1_202014-06-
26] 365 sequences; 25,429,610 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq96 149 6e-31
seq14 147 2e-30
seq24 143 2e-29
>seq96
Length=85826
Score = 149 bits (164), Expect = 6e-31
Identities = 151/194 (78%), Gaps = 2/194 (1%)
Strand=Plus/Plus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
||||||| ||||| ||||| || |||||||| | || || ||||||||||| ||||| |
Sbjct 59304 CCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 59363
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792
|||||||||| ||||||| ||||| || |||||||||| ||| || ||| ||| |
Sbjct 59364 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTG 59422
Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851
| | ||||| ||||| ||||| | || ||||| |||||||| || ||||| |||
Sbjct 59423 TCGATCGTGTCCGAAGACTCGACCTCAAGGGTGATCGTCTTACCCGTAAGGGTCTTAACG 59482
Query 41852 AAAATCTGCATGTT 41865
||||||||||| ||
Sbjct 59483 AAAATCTGCATCTT 59496
>seq14
Length=289536
Score = 147 bits (162), Expect = 2e-30
Identities = 166/220 (75%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | ||||| || || ||| ||||||||| ||||| ||||| ||
Sbjct 256435 CCACCACGGAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAC 256376
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || || ||||||||||| ||||| ||||||||||| ||||||| |||
Sbjct 256375 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGAGGA 256316
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | |||||||||| ||| || ||| ||| | | | ||||| ||||| ||
Sbjct 256315 ATACCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCGATGGTGTCCGAGGACTCGAC 256257
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAA 41854
||||| || || || ||||||||||| ||||| ||||||
Sbjct 256256 CTCCAGGGTGATGGTCTTACCCGTCAGGGTCTTGACGAAA 256217
>seq24
Length=264051
Score = 143 bits (158), Expect = 2e-29
Identities = 170/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || || || || || ||||||||||||||| |||||||||
Sbjct 250112 CCACCACGGAGACGAAGGACAAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAG 250053
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || || ||||||||||| ||||| ||||| ||||| ||||||| |||
Sbjct 250052 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCCGGAGGA 249993
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | |||||||||| ||| || |||| ||| | | | ||||| ||||| ||
Sbjct 249992 ATACCCTCCTTGTCCTGGATCTTGGACTTC-ACGTTGTCAATGGTGTCAGAGGACTCAAC 249934
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| | || || || || || ||||| ||||| || || ||||||||
Sbjct 249933 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 249886
Score = 123 bits (136), Expect = 2e-23
Identities = 166/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | |||| || || ||| ||||||||| ||||| || || |||
Sbjct 250340 CCACCACGGAGACGGAGAACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGAG 250281
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || | || || ||||||||||||||||| |||| ||||| ||||||| |||
Sbjct 250280 AGAGTACGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCCGGGGGG 250221
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813
| | |||||||||| ||| || ||| || | || | || || |||||| |
Sbjct 250220 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTATCTGACGACTCGA 250163
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| | || || || || || ||||| ||||| ||||| ||||||||
Sbjct 250162 CCTCAAGGGTAATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 250114
Score = 122 bits (134), Expect = 8e-23
Identities = 151/204 (74%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | || || || || ||| ||||||||||||||| |||||||||
Sbjct 249884 CCACCACGAAGGCGGAGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAG 249825
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || || |||||||| || ||||| || |||||||| ||||||| ||||
Sbjct 249824 AGGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAAATAAGGCGCTGCTGGTCCGGGGGA 249765
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | |||||||||| ||| | || | | ||| | | | ||||||| ||||| ||
Sbjct 249764 ATACCCTCCTTGTCC-TGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAGGACTCGAC 249706
Query 41815 CTCCACCGTTATCGTTTTACCCGT 41838
||| | || || || || || ||
Sbjct 249705 CTCGAGGGTGATGGTCTTGCCGGT 249682
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462301890738000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |