Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq6498 178 2e-39 >seq6498 Length=96284 Score = 178 bits (196), Expect = 2e-39 Identities = 617/951 (65%), Gaps = 20/951 (2%) Strand=Plus/Plus Query 53705 GCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTC 53763 |||| ||||||| || || || || ||||||| || | | ||| || | || ||||| Sbjct 27672 GCAAGCGATGCCAAGTTGCACACAGCGACCTCATCAGGAGC-GCAGTACTCGATAATCTC 27730 Query 53764 AGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 53823 ||||||||| || || || ||||| | || | ||| |||||||| ||| || Sbjct 27731 AGTGCAAAGGTTGGAACTGCGAATAGTTCCCAGGTTCTTTTGGTTACTCTTGCGGTTGCA 27790 Query 53824 CGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTT 53883 |||||| || | ||||| || ||||||| || |||| | ||| | ||| || | Sbjct 27791 GTGATCCTTGTACAACATGAAAGGGTTACCAGTCTCCGTCTGAGCTTCCAGAATGGCATA 27850 Query 53884 CCAGACGACACGAGCCTTTATTATA-GATTTGTATCTCTTTTCTCTTTCGTA--TAGTGT 53940 ||| | ||||||| || || || | || || || | |||| | || Sbjct 27851 CCACAGCTTCTGAGCCTTGATGGTAAGACGGCCACGTCCTTCCTGCT-CGTACTTGACGT 27909 Query 53941 ATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACA 54000 | | | | || || || || || | || |||| ||||| || || | || || Sbjct 27910 AAAGAGCC--TCGAATTCCTCACCGTAGCAATCAGCCAAGCCAGGGCACTCGTTGGGGCA 27967 Query 54001 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 54060 ||| | | ||| || |||| | || || || ||||| || | ||||| ||||| || Sbjct 27968 CATGAGGGTCCATTCGCCGTTCTTCTCAACACGCTTCATGAACAAGTCAGGGATCCACAG 28027 Query 54061 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 54120 || | || | ||| | | | | ||||| || || ||||| ||| || || Sbjct 28028 GGCAAGGAACAAATCGCGAGCGCGAATCTCCTCCTTACCGTGGTTCTTCCGAAGGTCAAG 28087 Query 54121 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTT 54180 |||| | | | ||||| |||||||| |||| ||| |||| | | | ||||| || || Sbjct 28088 GAACTCAAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACCAGGACGCTT 28147 Query 54181 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 54240 ||| || |||||||| | ||| | || ||||| || | || | || ||| |||| ||| Sbjct 28148 GTTGCCACCCTGATCGACGTAACGGGCAGTGTTGTTGAACACACGCAGCATAGGAACAAT 28207 Query 54241 ACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAA- 54299 ||| || || | ||| || || |||| || ||| ||| | ||||| ||| || Sbjct 28208 ACCGTTCGAGGTACCGTTAGTGCCGGCAATGTAGGAACCAGTAGCACGGATACGGTGAAC 28267 Query 54300 -TTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 54358 |||| |||| || || || ||||| || ||||| | || || || | |||||| Sbjct 28268 GTTGA--GACCGATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATCA 28325 Query 54359 TAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 54418 ||||| || || ||||| || ||| |||||| | | || ||| ||| | || | Sbjct 28326 TAGATACCTTCGATACTGTCCTCCTTCATGTCTACCAAGAAGCAGGAAGAAAGCTGAGGC 28385 Query 54419 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGT 54478 || || || || || || | ||||||||| ||||| || || | || || | Sbjct 28386 TGAGGGGTACCGGCGTTGAAGAGGGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACATG 28445 Query 54479 AGATTGTACGTCTCGATAGCTGAGTCTA---TATC-CCATTGATGAATTCCTACTGCGAC 54534 || ||||| || || | | | || | |||| || | || || || || || Sbjct 28446 AGGTTGTAAGTTTCCAGAACACGCTCAACATTATCACCCCAG----ATACCGACAGCAAC 28501 Query 54535 ACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGA 54594 |||||| | |||||||||||| | || || |||||| | | || || | ||| || Sbjct 28502 ACGCATAATCATGTGCTGAGGACGCTCGACAATCTTGCCATCAAGCTTGAGAAGGTAAGA 28561 Query 54595 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 54645 | |||||| || ||||| ||||| || | ||| ||||| || || || Sbjct 28562 TCTTTCCAGGGTCTTAAATCCAAAGTACTGGTAGTTGAAGTCACGGTCATA 28612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593673048416160