Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq6529 300 2e-76 seq6394 125 7e-24 seq6490 122 9e-23 seq6283 122 9e-23 >seq6529 Length=132804 Score = 300 bits (332), Expect = 2e-76 Identities = 584/855 (68%), Gaps = 18/855 (2%) Strand=Plus/Minus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 || |||||| ||| |||||| | ||||| || | |||| || || |||| |||||| Sbjct 77906 GAAAACCCCAACCGTTTCGTGCTCTTCCCTATCAAGTACCACGAGATCTGGCAAATGTAC 77847 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGC 116710 || ||||||||||| || |||||||||| ||||||| | ||||| |||||||| | Sbjct 77846 AAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAGGAGATTGACCTTTCCAAGGATCTTCAC 77787 Query 116711 GACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTT 116767 |||||| | ||| ||| | | |||| |||||| ||||| || ||||| Sbjct 77786 GACTGGAACAACCGCATGACAAAGGATGAGCAGTTCTTCATCTCTCACGTTCTTGCCTTC 77727 Query 116768 TTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTG 116827 |||||||| ||||| || ||||||||||| |||||||||||||| || ||||| Sbjct 77726 TTCGCCGCTTCTGACGGTATTGTCAACGAGAACTTGGTCGAGCGTTTCTCTGCTGAGGTC 77667 Query 116828 CAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCG 116887 ||| | |||| || || ||||||||||| || |||||| ||||||||| | |||||| Sbjct 77666 CAGATCCCCGAAGCCCGTTGCTTCTACGGTTTCCAGATCATGATGGAGAACATCCACTCG 77607 Query 116888 GAAATGTATTCGACCCTCATCGACACGTACGT----GCG-CTCTTCGGAGGAGA-AGCTC 116941 || | || || || || ||||| ||| | | | || || | | | | | ||| Sbjct 77606 GAGACCTACTCTTTGCTGATTGACACCTACATCAAGGAGCCTGCTCAGCGCACATACCTC 77547 Query 116942 CGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTG 117001 || |||||||| || || || || ||| | |||||||| ||||| ||| Sbjct 77546 ------TTCAACGCCATTGACACTATTCCCTGCATTCGCCGCAAGGCCGACTGGGCCCTG 77493 Query 117002 CGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTC 117061 ||||| || | || ||| | | || | | |||| ||||| ||||| || || || Sbjct 77492 AAGTGGATTGCTGACAAGGAGTCGACTTTTGCCCAGCGTCTGGTTGCCTTTGCCGCTGTT 77433 Query 117062 GAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTC 117121 ||||| ||||||| || || ||| ||| | || || ||||| || || || | Sbjct 77432 GAGGGTATCTTCTTCTCTGGTGCTTTTGCCTCTATCTTCTGGCTGCGCAAGCGTGGTATG 77373 Query 117122 ATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGAC 117181 |||||||| ||||||||| ||||||||| ||||| | || |||||||| || ||| Sbjct 77372 ATGCCCGGTCTGACTTTCTCCAACGAGCTTATCTCTCGTGATGAGGGTCTTCACACGGAC 77313 Query 117182 TTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAG 117241 |||||||| | || ||| || || | || || ||| | | || ||| Sbjct 77312 TTTGCCTGCCTTCTTTTCTCTCACCTGAACAACCGCCCCAGCAAGCAGTTGATCCAGGAC 77253 Query 117242 ATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCG- 117300 ||| |||| || || |||| ||| ||| || ||||| ||||| || || || |||| Sbjct 77252 ATCATCACTGATGCCGTCGTCATTGAGAAGGAGTTCCTTACCGAGGCTCTTCC-CTGCGC 77194 Query 117301 TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCT 117360 ||| || || | || || ||| | || |||||||||||||||||| | || Sbjct 77193 TCTTCTCGGTATGAACGCTGACCTCATGAAGACCTATATCGAGTTCGTCGCCGACCGTCT 77134 Query 117361 GCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAA 117420 ||| ||| || | || |||| ||||| | ||||||| | ||||||||| | Sbjct 77133 TCTGGTCGCTCTCGGTAACGACAAGGTGTACAAGGCCTCCAACCCCTTCGACTTTATGGA 77074 Query 117421 CCTCATCT-CCTTGG 117434 ||||| |||||| Sbjct 77073 GAACATCTCCCTTGG 77059 >seq6394 Length=53086 Score = 125 bits (138), Expect = 7e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || ||||| ||| |||| || || || || Sbjct 7012 ATGCAGATTTTCGTCAAGACCCTGACCGGAAAGACCATTACCCTCGAGGTTGAGTCCTCC 6953 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | ||||| || || | ||||| ||||| |||||| |||||||| Sbjct 6952 GATACCATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 6893 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | ||| ||||| ||||| || || | |||||||| ||| |||||| Sbjct 6892 CAGCGCCTGATTTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCCGATTACAAC 6833 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| |||| || || || || Sbjct 6832 ATCCAGAAGGAGTCCACTCTCCACCTCGT 6804 Score = 125 bits (138), Expect = 7e-24 Identities = 140/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGG 40771 |||| ||||| ||||||||| |||| || || || |||| | | | | | ||||| Sbjct 7446 TCACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCCGATACCATTGACAATGTCAAGT 7387 Query 40772 AAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCA 40831 || || | ||||| ||||| |||||| |||||||||| || || || | ||| |||| Sbjct 7386 CCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGCCTGATTTTCGCTGGCA 7327 Query 40832 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGC 40891 | ||||| || || | ||||||||| ||| |||||||||||||||||| |||| || | Sbjct 7326 AGCAGCTTGAGGATGGTCGCACCCTCTCCGATTACAACATCCAGAAGGAGTCCACTCTCC 7267 Query 40892 ATCTAGT 40898 | || || Sbjct 7266 ACCTCGT 7260 Score = 123 bits (136), Expect = 3e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| |||||||| | || || || || | Sbjct 7240 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACTCTTGAGGTTGAGTCCTCT 7181 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || |||| || || ||||| ||||| ||||||| Sbjct 7180 GACACCATCGACAACG-TCAAGTCGAAGATTCAGGATAAGGAGGGTATCCCTCCGGACCA 7122 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||||| || |||||||| |||| || ||||| ||||||||| Sbjct 7121 GCAGCGTCTTATCTTTGCGGGTAAGCAGCTGGAGGACGGCCGTACCCTTTCCGACTACAA 7062 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || || || || Sbjct 7061 CATCCAGAAGGAGTCTACTCTCCACCTCGT 7032 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || ||||| ||| | || ||||| | | Sbjct 6556 ATGCAGATCTTCGTGAAGACTCTGACCGGAAAGACCATTACCCTTGAGGTCGAGTCTTCT 6497 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| ||||| || || | ||||| ||||||||||| ||||||| Sbjct 6496 GATACCATTGACAACG-TCAAGAGCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCA 6438 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || || || |||||||| |||| || ||||| |||||||| Sbjct 6437 GCAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAGGACGGTCGTACCCTGTCTGACTACAA 6378 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || || || || Sbjct 6377 CATCCAGAAGGAGTCTACCCTCCACCTGGT 6348 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || || || ||| | || ||||| | | Sbjct 6784 ATGCAGATTTTCGTCAAGACCCTGACCGGAAAGACAATTACCCTTGAGGTCGAGTCGTCG 6725 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | ||| || |||| ||||| ||||| || ||| ||||||| Sbjct 6724 GATACCATCGACAATGTTAAGTCGAAGATTCAGGACAAGGAGGGTATTCCCCCGGACCAA 6665 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | ||| || || ||||| || || | || || ||| ||||||||| Sbjct 6664 CAGCGCCTGATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGTACTCTCTCGGACTACAAC 6605 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || ||||||||| | || || || || || Sbjct 6604 ATTCAGAAGGAGTCTACCCTTCACCTTGT 6576 >seq6490 Length=90610 Score = 122 bits (134), Expect = 9e-23 Identities = 145/194 (75%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || || ||||| || || |||||| | || ||||| || Sbjct 85092 AAGATGCAGATTTTCGTTAAGACCCTTACGGGTAAGACGATCACCCTTGAGGTCGAGTCC 85151 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | |||| ||||| || || | ||||| |||||||| ||| |||| Sbjct 85152 TCGGACACGATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 85210 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || || || | ||| ||||| |||||||| || | |||||||| ||||| Sbjct 85211 CCAGCAGCGCCTGATTTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCTGACTA 85270 Query 40866 CAACATCCAGAAGG 40879 |||||||||||||| Sbjct 85271 CAACATCCAGAAGG 85284 >seq6283 Length=33863 Score = 122 bits (134), Expect = 9e-23 Identities = 149/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || ||||| || ||||||||| | || ||||| | | |||| | | Sbjct 31068 TTCGTCAAGACCCTGACGGGTAAGACCATCACCCTGGAGGTCGAGTCTTCGGACACCATC 31127 Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | |||| ||||| || || | ||||| ||||| || ||| ||||||| || || || Sbjct 31128 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAACAGCGCCT 31186 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 |||| ||| ||||| ||||| || || | |||||||| ||||||||||||||||| Sbjct 31187 GATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCGGACTACAACATCCAGAA 31246 Query 40878 GGAGGCCACGCTGCATCTAGT 40898 |||| |||| || || || || Sbjct 31247 GGAGTCCACTCTCCACCTGGT 31267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515177067949920