Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq6394 116 3e-21 seq6283 102 7e-17 seq6490 100 2e-16 seq6529 89.7 4e-13 >seq6394 Length=53086 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| |||||||| || || |||||||| || || || || ||||| Sbjct 6348 ACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCGTCCTCC 6407 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| |||| ||||||||||| || ||||| |||||||||||||| Sbjct 6408 AGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGG 6467 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | ||| || | ||||||||| | ||| | || || Sbjct 6468 ATCTTGCTCTTGACGTTGTCAATGGTATCAGAAGACTCGACCTCAAGGGTAATGGTCTTT 6527 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||||||| || || || |||||||| Sbjct 6528 CCGGTCAGAGTCTTCACGAAGATCTGCAT 6556 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| || ||||||||||| || | ||| || |||||| ||||| || ||| Sbjct 6588 GTAGACTCCTTCTGAATGTTGTAGTCCGAGAGAGTACGGCCATCCTCAAGCTGCTTACCA 6647 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | || || ||||| || || || || || ||||||||||| ||| || ||| Sbjct 6648 GCGAAAATCAGGCGCTGTTGGTCCGGGGGAATACCCTCCTTGTCCTGAATCTTCGACTTA 6707 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||| |||| ||||||||| | ||| | || || |||||||| || Sbjct 6708 ACATTGTCGATGGTATCCGACGACTCGACCTCAAGGGTAATTGTCTTTCCGGTCAGGGTC 6767 Query 118722 TTTACAAAAATCTGCAT 118738 || || ||||||||||| Sbjct 6768 TTGACGAAAATCTGCAT 6784 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||||||| | ||||| |||||||||||| Sbjct 6809 GTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCATCCTCGAGCTG 6868 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || |||||| | || || |||||||| || || || || ||||||||||| || || Sbjct 6869 CTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTT 6928 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | || | ||| || | | ||| ||||||| ||| | || || ||||| Sbjct 6929 GGACTTGACATTGTCAATGGTATCGGAGGACTCAACCTCGAGGGTAATGGTCTTTCCGGT 6988 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 ||| || || || ||||||||||| Sbjct 6989 CAGGGTCTTGACGAAAATCTGCAT 7012 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| |||||||| || || |||||||| ||| | || || ||||| ||||| Sbjct 7037 GTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTACGGCCGTCCTCCAGCTG 7096 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || || |||| ||||||||||| || ||||| || |||||||| || ||| || Sbjct 7097 CTTACCCGCAAAGATAAGACGCTGCTGGTCCGGAGGGATACCCTCCTTATCCTGAATCTT 7156 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| |||||| | | ||| ||||| | || | || ||||| || Sbjct 7157 CGACTTGACGTTGTCGATGGTGTCAGAGGACTCAACCTCAAGAGTGATGGTCTTGCCAGT 7216 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 |||||| || ||||| |||||||| Sbjct 7217 CAGAGTCTTGACAAAGATCTGCAT 7240 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||||||| | ||||| |||||| ||||| Sbjct 7265 GTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGACCATCCTCAAGCTG 7324 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || |||||| | || || |||||||| || || || || ||||||||||| || || Sbjct 7325 CTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTT 7384 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | || | ||| || | | ||| ||||||| ||| | || |||||||| Sbjct 7385 GGACTTGACATTGTCAATGGTATCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGT 7444 >seq6283 Length=33863 Score = 102 bits (112), Expect = 7e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || ||||| || || |||||||| || || ||||| |||||| Sbjct 31267 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTCA 31208 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || |||||| |||| || ||||| || || || || || ||||||||||| Sbjct 31207 AGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCCGGGGGAATACCCTCCTTGTCCTGG 31148 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||||| ||||||||| | ||| | || || Sbjct 31147 ATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTCTTA 31088 Query 118710 CCGGTCAGAGTTTTTACAAAA 118730 || ||||| || || || ||| Sbjct 31087 CCCGTCAGGGTCTTGACGAAA 31067 >seq6490 Length=90610 Score = 100 bits (110), Expect = 2e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| || | ||||| |||||| ||||| || |||||| | || Sbjct 85282 TTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAAATC 85223 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 || |||||||| || || || |||||||||||||| || || || || | ||| Sbjct 85222 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 85163 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | ||||||| | ||||||||| | ||| | ||| || || || || || || || ||| Sbjct 85162 ATCGTGTCCGAGGACTCGACCTCAAGGGTGATCGTCTTACCCGTAAGGGTCTTAACGAAA 85103 Query 118731 ATCTGCAT 118738 |||||||| Sbjct 85102 ATCTGCAT 85095 >seq6529 Length=132804 Score = 89.7 bits (98), Expect = 4e-13 Identities = 337/521 (65%), Gaps = 11/521 (2%) Strand=Plus/Minus Query 44785 TATGCCCTGCGTGCGCAGAAAGGCCGAATGGGCGATGAAGTATATTGACGATGAAAAGAT 44844 ||| |||||| | ||| | |||||||| ||||| |||||| |||| || | || Sbjct 77529 TATTCCCTGCATTCGCCGCAAGGCCGACTGGGCCCTGAAGTGGATTGCTGACAAGGAGTC 77470 Query 44845 AACTTTGGCCGAACGATTGGTCGCATTCGCCATTGTCGAAGGAGTGTTCTTTTCGGGGAG 44904 ||||| ||| | || |||| || || ||| ||| || || | ||||| || || Sbjct 77469 GACTTTTGCCCAGCGTCTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCTGGTGC 77410 Query 44905 TTTTGCGGCGATATTTTACATGAA-AACCAAGGGAGTGATGCCCGGACTGACGTTTAGCA 44963 |||||| | || || | || || | || | |||||||||| ||||| || || Sbjct 77409 TTTTGCCTCTATCTTCTGGCTGCGCAAGCGTGGTA-TGATGCCCGGTCTGACTTTCTCCA 77351 Query 44964 ACGAATTGATTTCGAGAGACGAAGGTCTGCACACCAACTTTGCCTGCC-TCTACTATAAT 45022 |||| | || || | || || ||||| ||||| |||||||||||| ||| | | Sbjct 77350 ACGAGCTTATCTCTCGTGATGAGGGTCTTCACACGGACTTTGCCTGCCTTCTTTTCTCTC 77291 Query 45023 ACGAGAGTCGATCAAAAGTTGGA-CGCGCCCACCGTCAACGACATGTTCTCCGAAGCCGT 45081 || || ||| | | | || || | ||||| || | || ||||| Sbjct 77290 AC-----CTGAACAACCGCCCCAGCAAGCAGTTGATCCAGGACATCATCACTGATGCCGT 77236 Query 45082 GGCCATCGAGATGGAATTTTTTGCTGAGGCTCTGCCCGAATCGTTGGTGGGAATGAACGC 45141 | ||| |||| ||| || || | |||||||| ||| | | | || |||||||| Sbjct 77235 CGTCATTGAGAAGGAGTTCCTTACCGAGGCTCTTCCCTGCGCTCTTCTCGGTATGAACGC 77176 Query 45142 GAATATGATGAGAAAGTACATTGAGTTTGTCGCCGATCGTCTTCTCGTCCAGTTAAAGTA 45201 | | |||| | || || ||||| |||||||| |||||||| || | | ||| Sbjct 77175 TGACCTCATGAAGACCTATATCGAGTTCGTCGCCGACCGTCTTCTGGT-CGCTCTCGGTA 77117 Query 45202 TC-CCAAGATGTACTATACTGAGAACCCATTCGAGTTTATGAACAATATTTCGTTGGAGG 45260 | |||| ||||| | | ||||| ||||| |||||| | || || || | | | Sbjct 77116 ACGACAAGGTGTACAAGGCCTCCAACCCCTTCGACTTTATGGAGAACATCTCCCTTGGTG 77057 Query 45261 GCAAAACTAAtttttttGAGAAACGCGTCGGCGAATACAAG 45301 | || || || || || ||||| || || || || ||| || Sbjct 77056 GAAAGACCAACTTCTTCGAGAAGCGTGTTGGTGATTACCAG 77016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433795810431064