Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq6498 354 7e-93 seq6490 96.9 3e-15 seq6394 89.7 5e-13 >seq6498 Length=96284 Score = 354 bits (392), Expect = 7e-93 Identities = 1205/1861 (65%), Gaps = 62/1861 (3%) Strand=Plus/Plus Query 22144 GGTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGA 22203 ||| || || || ||||| |||||||| ||||| | |||||| | ||| || || Sbjct 26795 GGTACGCAGGTAGTACATACCCGTCTTGAGACCAAGCTTCCAACCCGCAAAGTGCATGCT 26854 Query 22204 CGTCAATTTT--CCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCG 22261 || ||| || |||| | || || |||| | || ||||||||| |||||| Sbjct 26855 GGT-AATCTTGCCCATGGTTGGGTCCTTC-ATGTGAATGTTCAACGACTGAGACTGATCA 26912 Query 22262 ATAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACG 22321 ||||| || || || ||||| ||||| | | | |||||| || || ||||| || Sbjct 26913 ATAAAGGCACCACGGTCGGCAGCCATCTGAACAACAGTACGCTGAGAAATCTCCCAAACA 26972 Query 22322 GTCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTA 22381 |||||||| || | |||| || ||| || ||| |||||| || ||||| Sbjct 26973 GTCTTGTAAAGAGACTTGATGTCCGCCGGAATGCTGGGGATGTTCTGGATAGAACCGTTG 27032 Query 22382 TTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAA----ATC 22437 | ||||| || || || | || ||||| ||| | |||||| ||| Sbjct 27033 TCCGAAATGATGCGGTTCTTCATGTTGTCCGACCACAGACCAA----GGTCAACAAGATC 27088 Query 22438 TTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAAT 22497 | || | |||| || || || ||||| || | ||| || ||||| |||||||| Sbjct 27089 GCGAAGCAACCAAGGGTTGACAACCTGGAACTCACCAGCCAACACACGGCGCTGGTAAAT 27148 Query 22498 GTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGT 22557 ||| || ||| | || ||||| | || ||||| ||||| ||||||| || || || || Sbjct 27149 GTTCGAAGTGTAAGGCTCGAAGCACTCGTTGTTACCCAGAATCTGAGAAGTTGACGCAGT 27208 Query 22558 CGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTG 22615 ||||| ||||||| || |||||||| | | |||| || |||| | | ||| | Sbjct 27209 GGGCATGGGCGCCAGAAGCAGCGAGTTGCGAACACCGTTCTGCTTGA---TCTGCTCCTT 27265 Query 22616 AGCATCGA---CCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGC 22672 || || ||| |||||||| || || || |||| ||||||| ||| | || Sbjct 27266 --CAAAGAGTTCCAATCCCACAGGTCACTGGGGGTGACAT---CCCACATGTCGAACTGA 27320 Query 22673 AACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCA 22732 | | || || | || || |||||||| ||| | ||| | | || || Sbjct 27321 AGGATACCCTGAGAAACAGGAGATCCCTCGTACGTCGAGTAAGTACCTTCAACAGCAGCG 27380 Query 22733 AGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAAT 22792 | ||||| ||||||| || ||| || || ||||| ||||| | |||||| | Sbjct 27381 ATATCGCACGAAGCCTCCAGGGCAGCGTGGTAAATGGTCTCAAAGATCTGCTTGTTGAGC 27440 Query 22793 T--CG-GCGGCGGC-GACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCAT 22848 | || || |||| ||| || | |||||||| | || |||||| || |||| Sbjct 27441 TGACGAGCCTCGGCAGAC----TCAAAAGGCATACGAAGGGCCAGGAACGCATCGGCCAG 27496 Query 22849 ACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTT----GCCTCGG 22904 ||||||||| || | ||| || || |||| || || ||| || |||||| Sbjct 27497 ACCCTGAACACCAACACCAATGGGACGGTGACGCATGTT----ACTGTTCCGGGCCTCGA 27552 Query 22905 GCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTA 22964 | ||| || ||| ||| || | | ||||||||| | | |||| || || | Sbjct 27553 CAACAGGGTAGTGGTTCACATCAATGATACGGTTCAAGTTGCGGACAACAACCTTGGTGA 27612 Query 22965 TNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGAT--TGTA--CAACAAACTTGTTGACG 23020 | |||||||| | | | |||| ||||||| || Sbjct 27613 CATCGTGCAGCTTCTGGAAGTCGTAGCAGTT-GTTGGTGTAGTCAACAAAGGCAGGGAGA 27671 Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGA-CGT-GTACTCTACAATTT 23078 || | ||| || | ||||| || || ||||| || ||| || |||||| | ||| | Sbjct 27672 GCAAGCGATGCCAAGTTGCACACAGCGACCTCATCA--GGAGCGCAGTACTCGATAATCT 27729 Query 23079 CGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGC 23138 | || || || ||| || || || |||| || | ||||| || || || |||| Sbjct 27730 CAGTGCAAAGGTTGGAACTGCGAATAGTTCCCAGGTTCTTTTGGTTACTCTTGCGGTTGC 27789 Query 23139 ACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTC 23198 | ||||||||| | |||| | || | || ||||| ||| | || | || || Sbjct 27790 AGTGATCCTTGTACAACATGAAAGGGTTACCAGTCTCCGTCTGAGCTTCCAGAATGGCAT 27849 Query 23199 GCCACATAGTCTGAGCGTG------AACACGTCGCACGTACCTGCCTTCTTCCTCGTACT 23252 ||||| ||||||| | || ||| | ||||| ||||| | |||||||| Sbjct 27850 ACCACAGCTTCTGAGCCTTGATGGTAAGACGGC-CACGT-----CCTTCCTGCTCGTACT 27903 Query 23253 TTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCG 23312 | ||| | || || ||||| ||||||| || || |||| ||| || | | | | Sbjct 27904 TGACGTAAAGAGCCTCGAATTCCTCACCGTAGCAATCAGCCAAGCCAGGGCACTCGTTGG 27963 Query 23313 GACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCC 23372 | |||||||| |||| || || ||||| || |||| || | || || |||| Sbjct 27964 GGCACATGAGGGTCCATTCGCCGTTCTTCTCAACACGCTTCATGAACAAGTCAGGGATCC 28023 Query 23373 ATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAAT 23432 | || || ||||| ||||| ||||| | |||||| || ||| |||||| | | Sbjct 28024 ACAGGGCAAGGAACAAATCGCGAGCGCGAATCTCCTCCTTACCGTGGTTCTTCCGAAGGT 28083 Query 23433 CCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTC 23492 | | || || ||||| || || ||||||||||| ||||||| |||||| || || || | Sbjct 28084 CAAGGAACTCAAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACCAGGAC 28143 Query 23493 TCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCA 23552 ||| ||||| |||||||||||||||||||| ||||||||| |||| | ||||| || | Sbjct 28144 GCTTGTTGCCACCCTGATCGACGTAACGGGCAGTGTTGTTGAACACACGCAGCATAGGAA 28203 Query 23553 CGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGT 23612 | | |||||| || | ||| ||| || | ||||| | || || | || Sbjct 28204 CAATACCGTTCGAGGTACCGTTAGTGCCGGCAATGTAGGAACCAGTAGCACGGATACGGT 28263 Query 23613 GAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGT 23672 |||||| || ||| || || || || || || ||||| || || || || || | Sbjct 28264 GAACGTTGAGACCGATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTAT 28323 Query 23673 CGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCG 23732 | ||||| || ||||| |||||||| || | | |||||||| || ||||| | || | Sbjct 28324 CATAGATACCTTCGATACTGTCCTCCTTCATGTCTACCAAGAAGCAGGAAGAAAGCTGAG 28383 Query 23733 CTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACA 23792 | || ||| |||| ||| || || || |||||| || ||| | |||||| Sbjct 28384 GCTGAGGGGTACCGGCGTTGAAGAGGGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACA 28443 Query 23793 TTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGC 23852 | || ||||| || || | | |||| | || || ||||||| || || | Sbjct 28444 TGAGGTTGTAAGTTTCCAGAACACGCTCAACATTATCACCCCAGATACCGACAGCAACAC 28503 Query 23853 GCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAAC 23912 |||| ||||||| ||||| | |||||| | ||| | || |||| || || || | Sbjct 28504 GCATAATCATGTGCTGAGGACGCTCGACAATCTTGCCATCAAGCTTGAGAAGGTAAGATC 28563 Query 23913 GTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCG 23972 || || || ||||||||||| || | ||||| |||||||| || | || ||||||| Sbjct 28564 TTTCCAGGGTCTTAAATCCAAAGTACTGGTAGTTGAAGTCACGGTCATAGACGATGGCCG 28623 Query 23973 A 23973 | Sbjct 28624 A 28624 >seq6490 Length=90610 Score = 96.9 bits (106), Expect = 3e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || || || ||||||||| | || || || | Sbjct 85092 AAGATGCAGATTTTCGTTAAGACCCTTACGGGTAAGACGATCACCCTTGAGGTCGAGTCC 85151 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| |||| | ||||| | || ||||||||| ||| | || || ||| Sbjct 85152 TCGGACACGATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 85211 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || || ||||||||||| ||| |||| || Sbjct 85212 CAGCAGCGCCTGATTTTCGCTGGCAAGCAGCTGGAGGA 85249 >seq6394 Length=53086 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| ||||| || || || || ||| |||| ||||| | ||| Sbjct 7012 ATGCAGATTTTCGTCAAGACCCTGACCGGAAAGACCATTACCCTCGAGGTTGAGTCCTCC 6953 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | ||||| | || ||||||||| || | || || |||||| Sbjct 6952 GATACCATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 6893 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||||||||| ||| | || || || | |||||| ||| Sbjct 6892 CAGCGCCTGATTTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCCGATTACAAC 6833 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || || ||||| || || || || Sbjct 6832 ATCCAGAAGGAGTCCACTCTCCACCTCGTCCT 6801 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||||||||| || || || || ||| | || || || | || Sbjct 6556 ATGCAGATCTTCGTGAAGACTCTGACCGGAAAGACCATTACCCTTGAGGTCGAGTCTTCT 6497 Query 31253 GACAGTGTCGAAACGGTCAAACAGAG-AATAGC--GGACAAGGAAGGCGTGCCGCCCGAC 31309 || | | || | ||||| ||| || | | ||||||||| ||| | || || ||| Sbjct 6496 GATACCATTGACAACGTCAA---GAGCAAGATCCAGGACAAGGAGGGCATCCCTCCGGAC 6440 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || || ||||| || ||| |||| ||| | || || || || Sbjct 6439 CAGCAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAGGACGGTCGTACCCTGTCTGACTAC 6380 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || || || || ||||| || Sbjct 6379 AACATCCAGAAGGAGTCTACCCTCCACCTGGTTCT 6345 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||||||||| ||||| || ||||| | || ||||| | || Sbjct 7240 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACTCTTGAGGTTGAGTCCTCT 7181 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || ||| ||||| || | || || |||||| Sbjct 7180 GACACCATCGACAACGTCAAGTCGAAGATTCAGGATAAGGAGGGTATCCCTCCGGACCAG 7121 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || || || || ||| |||| ||| || | ||| || ||| Sbjct 7120 CAGCGTCTTATCTTTGCGGGTAAGCAGCTGGAGGACGGCCGTACCCTTTCCGACTACAAC 7061 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || || ||||| || || || || Sbjct 7060 ATCCAGAAGGAGTCTACTCTCCACCTCGTCCT 7029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445729947452640