Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq6331 93.3 8e-14 seq6529 91.5 3e-13 >seq6331 Length=40350 Score = 93.3 bits (102), Expect = 8e-14 Identities = 160/230 (70%), Gaps = 12/230 (5%) Strand=Plus/Plus Query 35396 GGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATACC 35455 || ||||| ||||| ||||| || ||||| |||||||| |||||||||||||| | | Sbjct 29078 GGCGATTTAGGACCGGTATATGGGTTCCAGTGGCGTCACTTTGGTGCTGAATACG---TC 29134 Query 35456 TGTTCT---TCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAA---TATACTAAAG 35509 |||| | |||||||| ||| |||| | || || ||||| | ||| | ||| Sbjct 29135 GATTCTAAGACGGATTATACAGGACAGGGCGTCGACCAGTTGGCTGAGGTTATTCGGAAG 29194 Query 35510 ACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGAT 35569 | |||| || || ||| ||| |||| || | | |||||||| || ||| Sbjct 29195 ---TTACGAGAGAACCCGTTTGACAGACGGATTATCCTTAGCGCATGGAACCCCGCCGAT 29251 Query 35570 CTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGT 35619 || | ||||||||||| |||||||||||| ||| ||||| || || Sbjct 29252 CTGAAGAAAATGGCTCTTCCACCATGCCACATGTTTGCCCAATTCTACGT 29301 >seq6529 Length=132804 Score = 91.5 bits (100), Expect = 3e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||||||||| || ||||| || |||||||| |||||| || || || || |||||| Sbjct 77450 GTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCTGGTGCTTTTGCCTCTATCTTCTGG 77391 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 | || | ||||| |||| ||||| || | |||||| ||| | || ||| | || Sbjct 77390 CTGCGCAAGCGTGGTATGATGCCCGGTCTGACTTTCTCCAACGAGCTTATCTCTCGTGAT 77331 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTT 102072 || |||||||| |||||||| ||| | || || Sbjct 77330 GAGGGTCTTCACACGGACTTTGCCTGCCTTCTTTT 77296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989501053687610