Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq6498 210 3e-49 seq6529 138 2e-27 >seq6498 Length=96284 Score = 210 bits (232), Expect = 3e-49 Identities = 640/973 (66%), Gaps = 22/973 (2%) Strand=Plus/Plus Query 79621 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATTTCAGTGCA 79679 ||||||| || || || || ||||||| || | | ||| || | || || |||||||| Sbjct 27678 GATGCCAAGTTGCACACAGCGACCTCATCAGGAGC-GCAGTACTCGATAATCTCAGTGCA 27736 Query 79680 GAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 79739 ||||| || ||| ||||| | || | ||| |||||||| ||| || ||| Sbjct 27737 AAGGTTGGAACTGCGAATAGTTCCCAGGTTCTTTTGGTTACTCTTGCGGTTGCAGTGATC 27796 Query 79740 CTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 79799 ||| || | ||||| || ||||||| || |||||| ||| | ||| || | ||| | Sbjct 27797 CTTGTACAACATGAAAGGGTTACCAGTCTCCGTCTGAGCTTCCAGAATGGCATACCACA- 27855 Query 79800 GACTC-GAGCCTTTATTATA-GACTTGTATCTCTTTTCTCTTTCGTA-TTGT-GTATATA 79855 | || ||||||| || || ||| | || || || | |||| ||| ||| | | Sbjct 27856 GCTTCTGAGCCTTGATGGTAAGACGGCCACGTCCTTCCTGCT-CGTACTTGACGTAAAGA 27914 Query 79856 ATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCA 79915 | ||||| || || || | ||| | || ||||| || |||| || ||||| | Sbjct 27915 GCC--TCGAATTCCTCACCGTAGCAATCAGCCAAGCCAGGGCACTCGTTGGGGCACATGA 27972 Query 79916 ACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 79975 | ||| || || | | || || || ||||| || | ||||| ||||| || || | Sbjct 27973 GGGTCCATTCGCCGTTCTTCTCAACACGCTTCATGAACAAGTCAGGGATCCACAGGGCAA 28032 Query 79976 TAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 80035 || | ||| | | | | |||||| || || ||||| ||| || |||||| Sbjct 28033 GGAACAAATCGCGAGCGCGAATCTCCTCCTTACCGTGGTTCTTCCGAAGGTCAAGGAACT 28092 Query 80036 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTC 80095 | | | ||||| |||||||| |||| ||| ||||| | | | || || || ||||| | Sbjct 28093 CAAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACCAGGACGCTTGTTGC 28152 Query 80096 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 80155 | |||||||| | ||| | || ||||| || | || | || ||| |||| |||||| | Sbjct 28153 CACCCTGATCGACGTAACGGGCAGTGTTGTTGAACACACGCAGCATAGGAACAATACCGT 28212 Query 80156 TGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAA--TTGA 80213 | || ||||| || || |||| || ||| ||| | ||||| ||| || |||| Sbjct 28213 TCGAGGTACCGTTAGTGCCGGCAATGTAGGAACCAGTAGCACGGATACGGTGAACGTTGA 28272 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 |||| || || || ||||| || ||||| | || || || | ||||||||||| Sbjct 28273 --GACCGATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATCATAGAT 28330 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 80333 || || || || || || |||||| | | || ||| ||| | || | || Sbjct 28331 ACCTTCGATACTGTCCTCCTTCATGTCTACCAAGAAGCAGGAAGAAAGCTGAGGCTGAGG 28390 Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 || || || || || | ||||||||| ||||| || || | || |||| || || Sbjct 28391 GGTACCGGCGTTGAAGAGGGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACATGAGGTT 28450 Query 80394 GTACGTCTCAATAGCTGATTCTA---TATC-CCATTGATGAATTCCTACCGCGACACGCA 80449 ||| || || | | | || | |||| || | || || || || ||||||| Sbjct 28451 GTAAGTTTCCAGAACACGCTCAACATTATCACCCCAG----ATACCGACAGCAACACGCA 28506 Query 80450 TTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTT 80509 | | |||||||||||| | || || |||||| || | || | | ||||||| ||| Sbjct 28507 TAATCATGTGCTGAGGACGCTCGACAATCTTGCCATCAAGCTTGAGAAGGTAAGATCTTT 28566 Query 80510 CCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 80569 ||| || ||||| ||||| || | ||| ||||| || || || | || |||||| Sbjct 28567 CCAGGGTCTTAAATCCAAAGTACTGGTAGTTGAAGTCACGGTCATAGACGATGGCCGAGT 28626 Query 80570 TGAGTTTATCCTT 80582 || | ||||| Sbjct 28627 CCAGCTCTTCCTT 28639 >seq6529 Length=132804 Score = 138 bits (152), Expect = 2e-27 Identities = 372/566 (66%), Gaps = 10/566 (2%) Strand=Plus/Plus Query 49974 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 50033 ||| |||||||| || | | || || |||||||| || || || |||||||| | || Sbjct 77319 GTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTCAGACCGGGCATCATACC 77378 Query 50034 ACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGC 50093 |||||| ||||| || || || ||||| | ||||| |||||||| || || || || Sbjct 77379 ACGCTTGCGCAGCCAGAAGATAGAGGCAAAAGCACCAGAGAAGAAGATACCCTCAACAGC 77438 Query 50094 GGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGTATCCACTTTTGAGC 50150 |||||||||||| || | || || || | | | ||||| |||||||| | || Sbjct 77439 GGCAAAGGCAACCAGACGCTGGGCAAAAGTCGACTCCTTGTCAGCAATCCACTTCAGGGC 77498 Query 50151 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 50210 ||| |||||||| | || || || || || ||||| || ||||| || | Sbjct 77499 CCAGTCGGCCTTGCGGCGAATGCAGGGAATAGTGTCAATGGCGTTGAAGAGGTATGTGCG 77558 Query 50211 ttCATTACTATCTTTAACATAAGTATCGATCA--AAAGACTATACATTTCCGAATGAATG 50268 | | | || || | || || || |||| ||||| || | ||||| || ||| Sbjct 77559 CTGAGCAGGCTCCTTGATGTAGGTGTCAATCAGCAAAGA--GTAGGTCTCCGAGTGGATG 77616 Query 50269 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTA 50328 || || || ||||| || |||||||| || | || |||| ||||| || || | | Sbjct 77617 TTCTCCATCATGATCTGGAAACCGTAGAAGCAACGGGCTTCGGGGATCTGGACCTCAGCA 77676 Query 50329 CAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 50388 | || || || | || || || || || || |||||| || || || || || | Sbjct 77677 GAGAAACGCTCGACCAAGTTCTCGTTGACAATACCGTCAGAAGCGGCGAAGAAGGCAAGA 77736 Query 50389 ACATG---TTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCT 50445 || || | | || || | || || | | | || ||||| || | | ||| Sbjct 77737 ACGTGAGAGATGAAGAACTGCTCATCCTTTGTCATGCGGTTGTTCCAGTCGTGAAGATCC 77796 Query 50446 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 50505 || || | || | || || | ||||| || || ||||| ||||| || ||||| | | Sbjct 77797 TTGGAAAGGTCAATCTCCTCGGCGGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTGC 77856 Query 50506 CAGATGTCATGATATTGGATTGGGAA 50531 ||||| || || || | ||| ||||| Sbjct 77857 CAGATCTCGTGGTACTTGATAGGGAA 77882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718210063568880